Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0638
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 73 3e-13
04_04_1332 + 32718584-32718706,32718892-32718960,32719069-327191... 64 1e-10
06_02_0162 + 12466027-12466354,12466894-12467546 30 2.2
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76... 30 2.2
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 29 2.9
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 29 3.8
03_05_0284 - 22712390-22712899,22712978-22713304,22713742-227140... 29 5.0
09_01_0117 + 1808669-1809181,1810038-1810059,1810170-1810223,181... 28 6.6
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 28 6.6
02_02_0414 + 9972157-9972257,9972925-9973003,9973657-9973755,997... 28 6.6
07_03_0478 + 18556773-18556883,18557219-18557318,18557807-185595... 28 8.8
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/56 (60%), Positives = 40/56 (71%)
Frame = +3
Query: 51 NHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATED 218
+ QI ELK VD LEKERDFYF KLRD+E++CQ E +H PIV I +LYA ED
Sbjct: 198 DEQITELKLLVDSLEKERDFYFSKLRDVEILCQSPEVEH-LPIVNAIHKVLYAAED 252
>04_04_1332 +
32718584-32718706,32718892-32718960,32719069-32719155,
32719865-32719971,32720066-32720187,32720462-32720535,
32720833-32720946,32721100-32721213
Length = 269
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Frame = +3
Query: 39 VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATED 218
+ +L+ +I LK ++D EKERDFYF KLRDIE++CQ E +H P+ + + ILYA +
Sbjct: 188 IQQLSEKIAGLKISMDSAEKERDFYFSKLRDIEILCQRPELEH-LPMTKAVQKILYAADA 246
Query: 219 GFAP-PE 236
+P PE
Sbjct: 247 RDSPLPE 253
>06_02_0162 + 12466027-12466354,12466894-12467546
Length = 326
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 27 DSKVVDELNHQINELKATVDGLEKERDFYFGKLRDI 134
D ++D H I+EL +D E E +Y KLRDI
Sbjct: 113 DRNIIDNRRHSISELMEKLDH-ESEIKYYEDKLRDI 147
>03_01_0096 +
763850-764027,764873-765189,765262-765433,765513-765586,
765658-765835,765917-766026,766122-766221,766305-766391,
766505-766681,766847-767120,767201-767362,767450-767665,
767744-767781,768044-768102,768214-768339,768415-768540,
768642-768695,768789-768851,768924-768986,769079-769141,
769232-769732
Length = 1045
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Frame = +3
Query: 6 ISQSAKGDSKVVDELNHQINELKATVDGL-------EKERDFYFGKLRDIEVICQEMEEQ 164
+ AKG + L ++ EL++ +D EK+++ FGKL++ E +C ++++
Sbjct: 739 LENKAKGKEQFYKNLQEKVKELESQLDSKMHSQITSEKQQNELFGKLKEKEEMCTTLQQK 798
>10_08_0829 -
20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Frame = +3
Query: 90 LEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDI--LYATEDGFAP-PEEI--DGDN 254
LEKE DF K++++E C E+ ++ N ++ K+ ++ + ED P EE+ +GD
Sbjct: 529 LEKENDFLKVKIQELEKDCSELTDE-NLELIYKLKEVSEVAKGEDPSVPNSEEVSSEGDL 587
Query: 255 LTR--QKRTNIETRQYDI 302
R K +ET+ D+
Sbjct: 588 SDRLTSKVKYLETKCADL 605
>06_03_0478 -
21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 93 EKERDFYFGKLRDIEVICQEMEEQHNAPIVQKI-LDILYATEDGFAPPEEIDGDNLTRQK 269
+K+ + GK D++ Q+ + HNA K+ D+ +DG P E DG NL + +
Sbjct: 700 QKQGELGQGKSTDVD---QKEDAGHNAAENMKVDNDMDLLGKDGKEKPAEHDGQNLGKVE 756
Query: 270 RTNIE 284
NI+
Sbjct: 757 EKNID 761
>03_05_0284 -
22712390-22712899,22712978-22713304,22713742-22714091,
22714176-22714401,22714655-22714728,22715813-22716152
Length = 608
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +3
Query: 117 GKLRDIEVICQEMEEQHNAPIVQK---ILDILYATEDGFAPPEEIDGDNLTRQKRTNIET 287
G D+ V+ +E ++ + Q ++D+ Y + GF PP +L ++
Sbjct: 191 GAAHDVVVLRDALERENGLHVPQGKFYLVDVGYGAKPGFLPPFRSTRYHLNEWGNNPVQN 250
Query: 288 RQYDINAYHSALVYYIKRNY 347
+ N HS+L ++R +
Sbjct: 251 EKELFNLRHSSLRITVERAF 270
>09_01_0117 +
1808669-1809181,1810038-1810059,1810170-1810223,
1810684-1810892
Length = 265
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 171 HCVVLPSLDRSPLYPEAYRSRSLS 100
H PSL RS +P +RSRSLS
Sbjct: 73 HVAAAPSLGRSLRFPPPHRSRSLS 96
>03_01_0049 +
418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 42 DELNHQINELKATVDG----LEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYA 209
++LNH +N D LEKE + K++++E C E+ ++ N ++ K+ ++ A
Sbjct: 488 EKLNHVLNIENLGSDAVYLELEKENELLRVKIQELEKDCSELTDE-NLELIYKLKEVGGA 546
Query: 210 TE 215
T+
Sbjct: 547 TK 548
>02_02_0414 +
9972157-9972257,9972925-9973003,9973657-9973755,
9973848-9973913,9974225-9974376,9974503-9974584,
9974696-9974781,9974919-9975098,9975320-9975717,
9976192-9976790,9977141-9977239
Length = 646
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 606 KIYSNIYKILFSSVI*FSDFCTKVIYHPYVYFY 704
K+YSN+ LF+ VI S F + H ++ Y
Sbjct: 614 KVYSNLKAFLFTPVIFLSSFSAMSVVHISIFAY 646
>07_03_0478 +
18556773-18556883,18557219-18557318,18557807-18559513,
18559709-18560094,18560175-18560246,18560366-18560455
Length = 821
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 201 KYQESFAL*EHCVVLPSLDRSPLYPEAYRSRSLSLFLIH 85
K+ E FAL C + L RSP P A SR+ S L+H
Sbjct: 33 KHGEGFALAHRCRLRLRLRRSPSIPRA--SRAPSFILLH 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,911,897
Number of Sequences: 37544
Number of extensions: 309899
Number of successful extensions: 807
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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