Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0638
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)         33   0.18 
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)                 29   2.9  
SB_10935| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)             29   3.9  
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             29   5.1  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        29   5.1  
SB_47847| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.8  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)             28   9.0  
SB_50142| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        28   9.0  

>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
          Length = 1491

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +3

Query: 3   RISQSAKGDSKVV---DELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQ 164
           R ++  K   K++   DELN +INELK   D L KE   +  K +++E   +E E +
Sbjct: 590 RRNELQKKQEKIIKENDELNDRINELKKENDYLAKEIKDFANKRKEMETSYEEKERE 646


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +3

Query: 45   ELNHQINELKATVDGLEKERDFYFGKLRD 131
            EL   I EL+AT+ G+E+ERD Y  +L D
Sbjct: 3415 ELREAIEELRATLKGVEEERDRYENELDD 3443


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
 Frame = +3

Query: 6    ISQSAKGDSKVVDELNHQINE----LKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNA 173
            I  S + ++K+VD+   +I E    LK   D +   +     K+++ E + +E+++QH  
Sbjct: 1963 IEASQREENKLVDKYEEEIREYRKELKMREDEMLDYKRITDQKVQESEQMVEELKKQHED 2022

Query: 174  PIVQKILDILYATEDGFAPPEEIDGDNLTRQKRTNIETRQ 293
             ++    D     E+     EE D +NL ++ +  ++  Q
Sbjct: 2023 ALLAAEADYHSKMEEMLKKNEE-DMENLNKEHKLKLDELQ 2061


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 36   VVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQ 185
            V+ +LNH ++EL           D   G L DIE +    + +H  P ++
Sbjct: 3258 VIRDLNHTVHELVRNATKTANRFDKVKGILNDIETVFFSKDNRHEHPTIK 3307


>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
          Length = 1178

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
 Frame = +3

Query: 3   RISQSAKGDSKVVDELNHQINELKATVD--GLEKERDF---YFGKLRDIEVICQEMEEQH 167
           +IS   +  S + ++ + QINELK+ V+  G   + D+      K+ + E    EM++QH
Sbjct: 224 KISSMTRESSTLKEQKDKQINELKSLVEQSGENAQHDYEKKLNDKIAEFEQEKFEMQKQH 283

Query: 168 NAPIVQKILD 197
              I Q++LD
Sbjct: 284 TNNI-QELLD 292


>SB_10935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +3

Query: 24  GDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEME 158
           G+ + + ++  Q+ +  A+VD +  + +   G L D+E +C+ ++
Sbjct: 25  GELERLPDIIKQVQDASASVDAISSQTEVLEGLLLDLEEVCENLD 69


>SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)
          Length = 285

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 39  VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQ 164
           VDE N +++E+K  VD   KE     GKL +      E++E+
Sbjct: 227 VDETNKEVHEVKGKVDETNKEVHEVKGKLDETNKEVHEVKEK 268


>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 132 YPEAYRSRSLSLFLIHRLWLSIRLSDGLIHPQLSNHP 22
           YP +Y +R L L L++  WL +R++  L+ P   N+P
Sbjct: 380 YPSSYVARLLEL-LVNFSWLLVRMTCHLLLPVYWNYP 415


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +3

Query: 39   VDELNHQINELKATVDGLEKERDFYFGKLRDIE----VICQEMEEQHN 170
            +DE + +I  L+ T +GL+KE     G LR++E       +E+++ HN
Sbjct: 1157 LDEASQKIASLEETRNGLQKEAGDLRGSLREVEKARLEARRELQQLHN 1204


>SB_47847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 177 IVQKILDILYATEDGFAPPEEIDGDNLTRQKRTNI 281
           I+++    L  T DGF  P+   GD LT ++  N+
Sbjct: 64  ILKRFHAYLPRTSDGFVDPQLFSGDQLTVERAVNV 98


>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/84 (25%), Positives = 40/84 (47%)
 Frame = +3

Query: 42  DELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATEDG 221
           D++  ++ EL+  ++ L ++   Y GKL D+E     + E H+     ++++  +A E  
Sbjct: 705 DKMMTRLKELETQMEILTRQASEYRGKLVDVEEKPSRVREVHS-----ELVENTFAEEAQ 759

Query: 222 FAPPEEIDGDNLTRQKRTNIETRQ 293
             PP     D  +R K    E R+
Sbjct: 760 IEPPSI---DKRSRVKELEDENRE 780


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 39   VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATED 218
            VDE N ++ E K  +   +K+     GK+ ++ V    ++E+ ++  V    DI  A  D
Sbjct: 1349 VDETNKEVQETKKEIQETKKDVHEVKGKVSEMAVDLASLKEEFSSRNVNSKKDITAAKGD 1408


>SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)
          Length = 712

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 30  SKVVDELNHQINELKATVDGLEKERDFYFGKLRDIE 137
           +K +DEL   I  LK   + L++    + G+ RD+E
Sbjct: 638 AKQIDELEQHIETLKQQNNSLQRNNSSFEGEKRDLE 673


>SB_50142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 295 YCLVSIFVLFWRVRLSP 245
           YC++ +F LFW + L+P
Sbjct: 144 YCVLKVFALFWVIALAP 160


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = +3

Query: 6    ISQSAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQ 164
            +++  +   K++D+LN+QI  L+   D   +E   Y  +   +E   +E+E++
Sbjct: 1119 LNKGLEKKEKIIDDLNYQIKMLRKNFDANNQELISYKVRTDGLEAEKKEIEKR 1171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,466,622
Number of Sequences: 59808
Number of extensions: 389953
Number of successful extensions: 977
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)