Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0638
         (731 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.          26   1.4  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    25   1.8  
AY146755-1|AAO12070.1|  320|Anopheles gambiae odorant-binding pr...    25   3.2  
AY146754-1|AAO12069.1|  334|Anopheles gambiae odorant-binding pr...    25   3.2  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   3.2  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   7.4  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   7.4  

>CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.
          Length = 295

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 510 NFNVNYKHTRINKRVKI*YTRKAKGHC 430
           +F V  K T+ NK+++I +T+   G C
Sbjct: 181 SFRVQKKQTKQNKKIQIKHTKTKNGCC 207


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 397 TSRNILGRSIDTVTFSFSCVLNFNTF 474
           T R I G S+  VTF+   ++ +NT+
Sbjct: 162 TGRGIAGESVIDVTFASPSIVRYNTW 187


>AY146755-1|AAO12070.1|  320|Anopheles gambiae odorant-binding
           protein AgamOBP32 protein.
          Length = 320

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 320 STMIRVDVVLSCFNIRPLLAGEVVA 246
           S + +VDV+L C N+ PL  G   A
Sbjct: 155 SDLQQVDVLLQCANMLPLTVGRSCA 179


>AY146754-1|AAO12069.1|  334|Anopheles gambiae odorant-binding
           protein AgamOBP33 protein.
          Length = 334

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 320 STMIRVDVVLSCFNIRPLLAGEVVA 246
           S + +VDV+L C N+ PL  G   A
Sbjct: 155 SDLQQVDVLLQCANMLPLTVGRSCA 179


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 6   ISQSAKGDSKVVDELNHQINELKATVDGLEKE 101
           +S   +GD+K  +    ++  LK T+   EKE
Sbjct: 312 LSDEVQGDNKSKERAEQELERLKITIAEKEKE 343


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +3

Query: 102  RDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATED--GFAPPEEIDGDNLTRQKRT 275
            RD     L + E I +  E ++NAP V +    +YA +   GF   ++     L  ++  
Sbjct: 2534 RDVQGKPLIEYEGIYEGKESENNAPSVVRATVFVYADDRLVGFVRNDQFYSVWLDHERSV 2593

Query: 276  NIETRQYDINAYHSALVY 329
             +  +  +I A +  L Y
Sbjct: 2594 RLVIKNGEIVAAYDYLPY 2611


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +3

Query: 102  RDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATED--GFAPPEEIDGDNLTRQKRT 275
            RD     L + E I +  E ++NAP V +    +YA +   GF   ++     L  ++  
Sbjct: 2535 RDVQGKPLIEYEGIYEGKESENNAPSVVRTTVFVYADDRLVGFVRNDQFYSVWLDHERSV 2594

Query: 276  NIETRQYDINAYHSALVY 329
             +  +  +I A +  L Y
Sbjct: 2595 RLVIKNGEIVAAYDYLPY 2612


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,925
Number of Sequences: 2352
Number of extensions: 12623
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74844540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)