Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0638
(731 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 77 1e-14
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 77 1e-14
AL031269-2|CAA20332.1| 299|Caenorhabditis elegans Hypothetical ... 42 6e-04
Z81075-4|CAB03047.2| 596|Caenorhabditis elegans Hypothetical pr... 30 1.9
AJ005701-1|CAA06686.1| 596|Caenorhabditis elegans Na/Ca,K-excha... 30 1.9
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 29 2.6
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 29 2.6
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 29 2.6
Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical pr... 29 3.4
U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41009-1|AAA82278.3| 501|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC024761-10|AAP13759.1| 501|Caenorhabditis elegans Cop-9 signal... 29 4.5
AF025453-12|AAK31405.1| 600|Caenorhabditis elegans Hypothetical... 28 5.9
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/67 (52%), Positives = 47/67 (70%)
Frame = +3
Query: 39 VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATED 218
++E+ Q+ E + LEKERDFYF KLR IEVICQ+ E N V ++L++LY TE+
Sbjct: 111 LEEVTRQLTESDNVIASLEKERDFYFSKLRTIEVICQDNESIGNVE-VNRVLEVLYETEE 169
Query: 219 GFAPPEE 239
GFAPPE+
Sbjct: 170 GFAPPED 176
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/67 (52%), Positives = 47/67 (70%)
Frame = +3
Query: 39 VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATED 218
++E+ Q+ E + LEKERDFYF KLR IEVICQ+ E N V ++L++LY TE+
Sbjct: 240 LEEVTRQLTESDNVIASLEKERDFYFSKLRTIEVICQDNESIGNVE-VNRVLEVLYETEE 298
Query: 219 GFAPPEE 239
GFAPPE+
Sbjct: 299 GFAPPED 305
>AL031269-2|CAA20332.1| 299|Caenorhabditis elegans Hypothetical
protein VW02B12L.3 protein.
Length = 299
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 63 NELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPI-VQKILDILYATEDGFAPPEE 239
+E + T +E ER++Y+ L+ +E + E EE ++ + V + ILYA + +E
Sbjct: 220 DEWETTAKEMETEREYYYSILQRVESLANEAEESGSSTVDVAALKTILYAGNEDTEQVDE 279
Query: 240 IDGDNLTRQKRTNIE 284
I+ ++L + N++
Sbjct: 280 IENEHLVESLQANLD 294
>Z81075-4|CAB03047.2| 596|Caenorhabditis elegans Hypothetical
protein F35C12.2a protein.
Length = 596
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/81 (24%), Positives = 34/81 (41%)
Frame = +1
Query: 412 LGRSIDTVTFSFSCVLNFNTFVNSSMFXXXXXXXXXXTTVYIWMVADLLYIFLMYYNIFE 591
+G + + TF+ CVL F T + S+ ++Y+ +A L++ F+ F
Sbjct: 172 IGTIVGSATFNILCVLAFCTLFSKSILDLTWWPLFRDVSIYMLALAMLVFFFMDEMITFP 231
Query: 592 LCNVLKFILTYIKYYFHL*FN 654
L YI Y + FN
Sbjct: 232 --EALAMFSIYIVYCTVMKFN 250
>AJ005701-1|CAA06686.1| 596|Caenorhabditis elegans
Na/Ca,K-exchanger protein.
Length = 596
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/81 (24%), Positives = 34/81 (41%)
Frame = +1
Query: 412 LGRSIDTVTFSFSCVLNFNTFVNSSMFXXXXXXXXXXTTVYIWMVADLLYIFLMYYNIFE 591
+G + + TF+ CVL F T + S+ ++Y+ +A L++ F+ F
Sbjct: 172 IGTIVGSATFNILCVLAFCTLFSKSILDLTWWPLFRDVSIYMLALAMLVFFFMDEMITFP 231
Query: 592 LCNVLKFILTYIKYYFHL*FN 654
L YI Y + FN
Sbjct: 232 --EALAMFSIYIVYCTVMKFN 250
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 12 QSAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEE 161
+ + + + VD N +I +L+ ++ E ERD KL+D +EM +
Sbjct: 1870 RQGESNRQAVDRQNARIRQLRTQLEDTEAERDRLTNKLKDERRRAEEMTD 1919
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 12 QSAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEE 161
+ + + + VD N +I +L+ ++ E ERD KL+D +EM +
Sbjct: 1870 RQGESNRQAVDRQNARIRQLRTQLEDTEAERDRLTNKLKDERRRAEEMTD 1919
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 12 QSAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEE 161
+ + + + VD N +I +L+ ++ E ERD KL+D +EM +
Sbjct: 1870 RQGESNRQAVDRQNARIRQLRTQLEDTEAERDRLTNKLKDERRRAEEMTD 1919
>Z47069-1|CAA87338.1| 964|Caenorhabditis elegans Hypothetical
protein F36G3.1 protein.
Length = 964
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/70 (20%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +3
Query: 3 RISQSAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKL-RDIEVICQ--EMEEQHNA 173
++ K ++ +L ++ E + T+DG+E E + + +L +I+ +C+ + ++Q A
Sbjct: 674 KVKSGEKELLQINSKLKEELEESQQTIDGIEIEAEQQYTELTSEIDELCEIVQRKDQELA 733
Query: 174 PIVQKILDIL 203
+ +K+ +++
Sbjct: 734 ILKEKVTNVI 743
>U64852-7|AAB04970.1| 452|Caenorhabditis elegans Hypothetical
protein W01A11.1 protein.
Length = 452
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 27 DSKVVDELNHQINELKATVDGLEKERDFYFG 119
+ V+D+L H++ + + LE DFY+G
Sbjct: 57 EQSVIDDLKHRLQNARISHSVLEDSDDFYYG 87
>U41009-1|AAA82278.3| 501|Caenorhabditis elegans Hypothetical
protein C06E7.2 protein.
Length = 501
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 15 SAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEE 161
S + + K ELN I ELK+ + ++ E+D K R++ + + EE
Sbjct: 410 SKEEEEKAEKELNEIIKELKSDEEAVDGEKDVGELKTREVNMTSENGEE 458
>AC024761-10|AAP13759.1| 501|Caenorhabditis elegans Cop-9
signalosome subunit protein 3 protein.
Length = 501
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 24 GDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKIL 194
G + V+ LNH ++E L+ + F LRD+ + C +E+++ I Q+I+
Sbjct: 106 GTDRAVELLNHYVDENNFVGGHLKLVPEIIFPLLRDVGLYC--LEKKNKPEIGQRII 160
>AF025453-12|AAK31405.1| 600|Caenorhabditis elegans Hypothetical
protein C08F1.8 protein.
Length = 600
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 174 PIVQKILDILYATEDGFAPPEEIDGDNLTRQKRTNIETRQYDINAYHSALVYYI 335
PIV + + E GF+ E I G + R N+ET Q+D +V YI
Sbjct: 546 PIVYRAFLACNSHELGFSGKEPISGRKWSGVCRWNVETSQWDYVETPQKVVVYI 599
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,684,875
Number of Sequences: 27780
Number of extensions: 312353
Number of successful extensions: 837
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -