Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0638
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67270.1 68418.m08480 microtubule-associated EB1 family prote...    69   3e-12
At5g62500.1 68418.m07844 microtubule-associated EB1 family prote...    67   1e-11
At3g47690.1 68416.m05194 microtubule-associated EB1 family prote...    62   4e-10
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    32   0.45 
At3g58430.1 68416.m06512 meprin and TRAF homology domain-contain...    29   4.2  
At3g44690.1 68416.m04806 expressed protein                             28   5.6  
At4g10370.1 68417.m01702 DC1 domain-containing protein contains ...    27   9.7  
At3g58440.1 68416.m06513 meprin and TRAF homology domain-contain...    27   9.7  
At2g30500.1 68415.m03715 kinase interacting family protein simil...    27   9.7  

>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profiles PF00307: Calponin homology (CH)
           domain, PF03271: EB1 protein
          Length = 329

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 35/67 (52%), Positives = 45/67 (67%)
 Frame = +3

Query: 15  SAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKIL 194
           SAK  SK V   + +I ELK  +D LEKERDFYF KLRD+E++CQ  + +H  P+V  I 
Sbjct: 194 SAK-QSKPVPAYDEKITELKLYIDSLEKERDFYFSKLRDVEILCQNPDTEH-LPLVGSIK 251

Query: 195 DILYATE 215
            ILYA +
Sbjct: 252 RILYAAD 258


>At5g62500.1 68418.m07844 microtubule-associated EB1 family protein
           similar to EBF3-S (Microtubule-associated protein) [Homo
           sapiens] GI:12751131; contains Pfam profiles PF00307:
           Calponin homology (CH) domain, PF03271: EB1 protein
          Length = 293

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 35/70 (50%), Positives = 46/70 (65%)
 Frame = +3

Query: 30  SKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYA 209
           S  V  L+ ++ +LK +VD LEKERDFYF KLRDIE++CQ   E  + PIV  +  ILYA
Sbjct: 185 SAEVQALSKEVEDLKVSVDLLEKERDFYFSKLRDIEILCQ-TPELDDLPIVVAVKKILYA 243

Query: 210 TEDGFAPPEE 239
           T+   +  EE
Sbjct: 244 TDANESVLEE 253


>At3g47690.1 68416.m05194 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profile PF03271: EB1 protein
          Length = 276

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 30/59 (50%), Positives = 41/59 (69%)
 Frame = +3

Query: 39  VDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNAPIVQKILDILYATE 215
           V  L+ ++ +LK + D LEKERDFYF KLRD+E++CQ   E  + PIV  +  ILYAT+
Sbjct: 181 VQALSKELVDLKISTDLLEKERDFYFSKLRDVEILCQ-TPELDDLPIVVAVKKILYATD 238


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
 Frame = +3

Query: 15  SAKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHN-----API 179
           S +G    +++  H+I  L+  +  L +ERD   G   D   +  +  EQ N       I
Sbjct: 499 SERGFESKIEQKQHEIYSLEHKIKTLNRERDVMAGDAEDRVKLSLKKTEQENLKKKHKKI 558

Query: 180 VQKILDILYATEDGFAPPEEIDGDNLTRQKRTNIETRQYD 299
           + +  D +     G  PPE+ D      Q   +IE R+YD
Sbjct: 559 IDECKDRIRGVLKGRLPPEK-DMKREIVQALRSIE-REYD 596


>At3g58430.1 68416.m06512 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains weak hit to Pfam PF00917: MATH
           domain
          Length = 552

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 132 IEVICQEMEEQHNAPIVQKILDILYATEDGF 224
           IE +CQ +EE  N  +V+  + + Y  + GF
Sbjct: 391 IETLCQSLEELSNEDLVEADIALTYVKDAGF 421


>At3g44690.1 68416.m04806 expressed protein 
          Length = 1176

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 30  SKVVDELNHQINELKATVDGLEKERDFY 113
           S  +D ++H+++E K  +DG+ ++ D Y
Sbjct: 41  SDKIDMVSHRVDEQKHDIDGIRQDSDLY 68


>At4g10370.1 68417.m01702 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 687

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 213 QWHIKYQESFAL*EHCVVLPSLDRSPLYP 127
           Q++   +  F L EHC   P + R PL+P
Sbjct: 394 QFYSCIESDFILHEHCANAPRMKRHPLHP 422


>At3g58440.1 68416.m06513 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 601

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 132 IEVICQEMEEQHNAPIVQKILDILYATEDGF 224
           IE +CQ +EE  N  +V+  + + Y  + GF
Sbjct: 342 IETMCQSLEELSNEDLVEADVALTYLRDAGF 372


>At2g30500.1 68415.m03715 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 517

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +3

Query: 18  AKGDSKVVDELNHQINELKATVDGLEKERDFYFGKLRDIEVICQEMEEQHNA 173
           A+   K+ D +NH +  ++   D   K+   YF K  ++  + +E    + A
Sbjct: 38  AENLEKMDDRVNHMLKLIEEDADSFAKKAQMYFQKRPELIQLVEEFYRMYRA 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,357,208
Number of Sequences: 28952
Number of extensions: 273305
Number of successful extensions: 753
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)