Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0635
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    29   0.92 
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.9  
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.5  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    25   8.6  

>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -1

Query: 239 TSLRVEVGRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAALQV-CLYDINSLL 63
           ++LR ++ +     R +A+  L G       G +     G+ ++ +A+ +  L+D+  L+
Sbjct: 427 STLRSDIEKSSKFSRTNALKTLYGSKPHVFSGSSQRRATGKNIHESAIALFSLHDVPGLM 486

Query: 62  DVLVYRILSNGS 27
           + L+Y+    GS
Sbjct: 487 EELIYKSRGRGS 498


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 259 VKTSLVRHPFEWKLVEFSVQAA 194
           V  SLVRHP   K++ F +Q+A
Sbjct: 147 VSKSLVRHPHRLKMLPFGIQSA 168


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 367 LAANGTSEAACEYHTEELNQSDTDSNAGEHHTNVLHVKTSLVRHPF 230
           L A+GT+ A   +H+  L Q D+  N   + T    +  S   HP+
Sbjct: 93  LNADGTAFANPSFHSFGLPQEDSQDNTQTYSTPYTTMNPSNEMHPY 138


>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 370 ILAANGTSEAACEYHTEELNQSDTDSNAGEHHTN 269
           ++ +  + +   +Y  E+L  SD DS+   HH N
Sbjct: 64  LIESGASIDFISQYCLEKLASSDNDSSVHNHHDN 97


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 25/86 (29%), Positives = 44/86 (51%)
 Frame = -2

Query: 331 YHTEELNQSDTDSNAGEHHTNVLHVKTSLVRHPFEWKLVEFSVQAATTPSLISWAEQHVL 152
           Y T + ++S+   + G+   ++L VK SL  HP +  L +FS+  A   +L+   +Q  L
Sbjct: 111 YLTTQYDESNEVLD-GDDEVSLL-VK-SLCPHPTDGLLTDFSITPALMGNLV--PQQCNL 165

Query: 151 GMGRP*SAQSAGLFIPQHCKSVCMIS 74
            +G+  +  S+GL    H     +IS
Sbjct: 166 WIGKSENGTSSGLHHDFHDNIYAVIS 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,859
Number of Sequences: 5004
Number of extensions: 52647
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)