Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0635
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733...    29   2.9  
12_02_1060 - 25752181-25754229                                         29   3.9  
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898...    29   5.2  
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325...    29   5.2  
11_04_0458 - 17923596-17923805,17924034-17924950,17925044-17925236     28   9.0  
11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548...    28   9.0  
01_01_0870 - 6789903-6792251                                           28   9.0  

>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
            28273455-28274791,28275451-28275848,28275963-28277644,
            28277727-28277884,28278645-28278802,28279110-28279270,
            28279826-28280014
          Length = 1524

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 294  ESVSLWFSSSV*YSHAASLVPFAANMKQFKLQQNTKQNLYDKT 422
            ES  L+F S++ Y H AS +    ++  FK Q +  QNLY  T
Sbjct: 1310 ESTRLYFESALKYLHVASTLEPPPSIDGFK-QCDAAQNLYSDT 1351


>12_02_1060 - 25752181-25754229
          Length = 682

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 393 FVVI*TVSYWLRMERARQHANIT 325
           FVV+  VS WL + R R+HA +T
Sbjct: 292 FVVVLGVSIWLLLHRRRKHAGLT 314


>07_03_0123 -
           13688562-13689146,13689233-13689583,13689665-13689861,
           13689954-13690072,13690103-13690245,13690332-13690544,
           13690649-13690774,13690891-13691028,13691109-13691454,
           13691532-13691798,13691939-13691983,13692148-13692349,
           13692405-13692507,13692599-13692810,13692891-13693113,
           13693211-13693291
          Length = 1116

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
 Frame = -1

Query: 302 YRLQRRRAPYQCPSCENQF------SKTSLRVEVGRVLGAGRDDAVIDL 174
           Y  +RR     CP C+ +F      S    R+   RV G   +D V DL
Sbjct: 70  YEYERREGTQNCPQCKTRFKRLRGKSHPQCRIGCARVPGDEEEDGVDDL 118


>06_01_0456 -
           3249662-3249710,3249838-3250451,3250694-3250780,
           3251509-3252384,3252445-3252534,3252645-3252696,
           3253117-3253168,3253265-3253363,3253444-3253528,
           3253620-3253668,3253749-3253816,3254417-3254482,
           3255690-3255741,3256685-3256767,3256915-3256946,
           3257271-3257466,3258542-3258607,3259797-3259869,
           3260010-3260224
          Length = 967

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 323 RGAEPKRYRLQRRRAPYQCPSCENQFSKTSLRVE 222
           +G   K Y+L  R+  ++CP C    + T LR++
Sbjct: 388 KGRLCKHYQLNLRKPTWRCPFCNTPSNFTDLRID 421


>11_04_0458 - 17923596-17923805,17924034-17924950,17925044-17925236
          Length = 439

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 643 LHNIDKCAQDRRLILETFPLSNIDPFFLLYSNI 741
           LH + KC +DR +  ET P  + DP F  ++ +
Sbjct: 95  LHQLAKCRRDRLIDPETQPEESQDPRFRTFTQL 127


>11_01_0671 -
           5479240-5479286,5480399-5480588,5480669-5480824,
           5481005-5481931
          Length = 439

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 218 GRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAALQVC 87
           G V  AG D A   LLGG + A+  + + GP  R ++ + L+ C
Sbjct: 277 GMVDNAGNDSAKCVLLGGLSEAKKLELIAGPEMR-IFRSDLRWC 319


>01_01_0870 - 6789903-6792251
          Length = 782

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/69 (28%), Positives = 35/69 (50%)
 Frame = -1

Query: 218 GRVLGAGRDDAVIDLLGGAARARYGQTVIGPVGRTVYTAALQVCLYDINSLLDVLVYRIL 39
           G + G+    AV +L G     +  +T +  VG   +T  +++  + +N    +LVY  +
Sbjct: 490 GTLPGSTTVVAVKNLKGVGQAEKQFRTEVQTVGMIRHTNLVRLLGFCVNGNRRLLVYEYM 549

Query: 38  SNGSVQVAH 12
           SNGS+  AH
Sbjct: 550 SNGSLD-AH 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,714,995
Number of Sequences: 37544
Number of extensions: 320076
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)