Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0635
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67734-1|CAA91527.2| 279|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z73971-4|CAA98254.1| 205|Caenorhabditis elegans Hypothetical pr... 38 0.010
AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin f... 36 0.040
AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin f... 36 0.040
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 34 0.093
Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical pr... 32 0.49
AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical ... 32 0.49
L17337-5|ABM74562.1| 306|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81547-1|CAB04459.1| 354|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z75552-3|CAA99940.1| 465|Caenorhabditis elegans Hypothetical pr... 29 4.6
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 29 4.6
Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical pr... 28 6.1
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 28 6.1
AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical... 28 6.1
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical... 28 6.1
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical... 28 6.1
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct... 28 6.1
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct... 28 6.1
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct... 28 6.1
AC006624-3|AAF39786.2| 301|Caenorhabditis elegans Hypothetical ... 28 6.1
U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin fam... 28 8.0
DQ178635-1|ABD75714.1| 361|Caenorhabditis elegans tetraspanin f... 28 8.0
>Z67734-1|CAA91527.2| 279|Caenorhabditis elegans Hypothetical
protein B0198.1 protein.
Length = 279
Score = 45.2 bits (102), Expect = 5e-05
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Frame = +3
Query: 24 NASITQYPVDKNVQKTIDIIQTDLQCCGINSPADW-----ADHGLP-----------IPS 155
N + Y +D N+ K ++ +Q D +CCG N+ DW DH LP IP
Sbjct: 134 NDILNNYNLDPNIAKAVNYLQRDSKCCGSNAFNDWPKPEVEDHYLPYAKTVVQRVQYIPD 193
Query: 156 TCCSAQEINDGVVAACTENSTNFHSKGCL 242
+CC + G A +++ N +GCL
Sbjct: 194 SCCKSTHQRKG--CALSDSPNNIFYRGCL 220
>Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical
protein C17G1.8 protein.
Length = 291
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Frame = +3
Query: 6 SVMRNLN--ASITQYPVDKNVQKTIDIIQTDLQCCGINSPADWA-----DHGLPIPSTCC 164
S++ N+N A +T+ + + T D +Q +LQCCG+++ DW + L P +CC
Sbjct: 113 SMLHNINTTAVVTKIGREIKLSLTWDHLQRELQCCGVDNYTDWHYSVHWPNNLYTPDSCC 172
Query: 165 SAQEIN-DGVVAAC---TENSTNFHSKGCLTK 248
Q + + C + + + KGC K
Sbjct: 173 DPQHFDAENGTENCGKLPDEQSLLYQKGCFPK 204
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 37.9 bits (84), Expect = 0.008
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 DSVMRNL-NASITQYPVDKNVQKTIDIIQTDLQCCGINSPADW-ADHGLPIPSTCCSAQE 176
D+ +RNL N + Y D ++Q ID +Q CCGIN DW + I + ++ E
Sbjct: 143 DNYIRNLLNDVVVGYRDDPDLQLLIDSMQETWMCCGINGADDWDRNTYFSIEAREVASPE 202
Query: 177 INDGVVAACTENSTNFHSK 233
GV +C NS+ K
Sbjct: 203 AG-GVPFSCCINSSKLEFK 220
>Z73971-4|CAA98254.1| 205|Caenorhabditis elegans Hypothetical
protein C50H2.6 protein.
Length = 205
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 144 PIPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKLV 254
P+P+T CSA I++ V +C ST H+K L+K V
Sbjct: 96 PLPATFCSAASIDNNAVKSCKNKSTTLHAKILLSKEV 132
>AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin
family protein 14,isoform a protein.
Length = 427
Score = 35.5 bits (78), Expect = 0.040
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +3
Query: 30 SITQYPVDKNVQKTIDIIQTDLQCCGINSPAD-WADHGLPIPSTCCSA--QEINDGVVAA 200
++ Y ++N+ + +D +Q +L+CCG++S A + D + C ++ Q GV +
Sbjct: 144 AVKNYHTNRNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNSNPQPEKCGVPFS 203
Query: 201 CTENSTNFHSKGCLTKLVFT*RTL 272
C S + G L+ R+L
Sbjct: 204 CCRKSVISEAAGSSNPLLPAMRSL 227
>AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin
family protein 14,isoform b protein.
Length = 451
Score = 35.5 bits (78), Expect = 0.040
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +3
Query: 30 SITQYPVDKNVQKTIDIIQTDLQCCGINSPAD-WADHGLPIPSTCCSA--QEINDGVVAA 200
++ Y ++N+ + +D +Q +L+CCG++S A + D + C ++ Q GV +
Sbjct: 168 AVKNYHTNRNLAEIMDALQENLECCGVSSIAQGYRDWNMSYQFNCTNSNPQPEKCGVPFS 227
Query: 201 CTENSTNFHSKGCLTKLVFT*RTL 272
C S + G L+ R+L
Sbjct: 228 CCRKSVISEAAGSSNPLLPAMRSL 251
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 34.3 bits (75), Expect = 0.093
Identities = 16/74 (21%), Positives = 29/74 (39%)
Frame = +3
Query: 21 LNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAA 200
L + +Y + V+ D +CCG+ + +DW IP +CC + +
Sbjct: 118 LQTGMVRYHESRGVESAWDKTHQLFECCGVTNSSDWLTF-TTIPDSCCIEE------IEG 170
Query: 201 CTENSTNFHSKGCL 242
C + GC+
Sbjct: 171 CARENAPLFEPGCI 184
>Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical
protein F53B2.2 protein.
Length = 230
Score = 31.9 bits (69), Expect = 0.49
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 33 ITQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTC 161
+ Y + + T+D + T L+CCG N D+ G P++C
Sbjct: 124 VANYHNNSRTKNTLDWVHTSLKCCGANGCEDFLPAG-NFPTSC 165
>AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical
protein Y45F10B.1 protein.
Length = 241
Score = 31.9 bits (69), Expect = 0.49
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 33 ITQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTC 161
+ Y + + T+D + T L+CCG N D+ G P++C
Sbjct: 135 VANYHNNSRTKNTLDWVHTSLKCCGANGCEDFLPAG-NFPTSC 176
>L17337-5|ABM74562.1| 306|Caenorhabditis elegans Hypothetical
protein ZK686.6 protein.
Length = 306
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 274 YGARRRWSRYRFGSAPRCDIRMLPRSFHSQPI 369
Y R R SR + S+P+C I LP+ F Q I
Sbjct: 7 YEKRERSSRIQKCSSPQCCINRLPKKFQDQDI 38
>Z81547-1|CAB04459.1| 354|Caenorhabditis elegans Hypothetical
protein F53F8.1 protein.
Length = 354
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -1
Query: 362 CEWNERGSMRISHRGAEPKRYRLQRRRAPYQCPSCENQFSKTS-LRVEVGRVLGAGRDDA 186
CEW S R + + YR P+ C C +FS++ L++ + R +DD
Sbjct: 285 CEW-PGCSWRFARSDELTRHYRKHTGAKPFACKECSRKFSRSDHLQLHMKRHETDEQDDG 343
Query: 185 VID 177
+ D
Sbjct: 344 MDD 346
>Z75552-3|CAA99940.1| 465|Caenorhabditis elegans Hypothetical
protein W04D2.3 protein.
Length = 465
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = +3
Query: 336 HAASLVPFAANMKQFKLQQNTKQNLYDKTITNKNNEIQFYFITYLYLMFKRVL**VYLSN 515
H +S + F ANM++ K+Q + KT+T N + FI+++YL F +VL Y N
Sbjct: 164 HLSSALRFQANMERKKVQVH-------KTVTFLNFQYSSGFISWIYL-FTKVL---YFLN 212
Query: 516 LF 521
+F
Sbjct: 213 VF 214
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 60 VQKTIDIIQTDLQCCGINSPADWADHGLPIPSTC 161
VQ+++D +QT +CCG +D+ IP +C
Sbjct: 193 VQESLDHLQTAFRCCGNAGCSDFRVFRQDIPRSC 226
>Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical
protein F53B6.1 protein.
Length = 258
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Frame = +3
Query: 54 KNVQKTIDIIQTDLQCCGIN--------SPADWADH----GLPIPSTCCSAQEI 179
K + ++ D +Q++ +CCG+N + W H L IP +CC EI
Sbjct: 142 KGITESWDALQSNFKCCGVNGTDNAQIWKTSKWYMHQRAPKLLIPESCCIPSEI 195
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 9 VMRNLNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDG 188
++++ +T P +K V + ID +Q +CCG P D+ ST ++EI
Sbjct: 94 IVKSKYGVMTSEPENKMVTEFIDKLQFYEKCCGSLGPTDYISSRWS-QSTNQDSEEIESP 152
Query: 189 V--VAACTE 209
+ V+ CT+
Sbjct: 153 LFPVSCCTQ 161
>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
protein Y51A2D.19c protein.
Length = 1131
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 473 FNV*TCIVIS-VPLKPICIF*NEFFLVYFYIHVLLLKDK 586
F V TCI P + I + N FFLVYF+I + DK
Sbjct: 165 FQVETCIPWQDSPSQQIDLGFNIFFLVYFFIRFIAASDK 203
>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
protein Y51A2D.19b protein.
Length = 1118
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 473 FNV*TCIVIS-VPLKPICIF*NEFFLVYFYIHVLLLKDK 586
F V TCI P + I + N FFLVYF+I + DK
Sbjct: 165 FQVETCIPWQDSPSQQIDLGFNIFFLVYFFIRFIAASDK 203
>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
protein Y51A2D.19a protein.
Length = 1140
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 473 FNV*TCIVIS-VPLKPICIF*NEFFLVYFYIHVLLLKDK 586
F V TCI P + I + N FFLVYF+I + DK
Sbjct: 165 FQVETCIPWQDSPSQQIDLGFNIFFLVYFFIRFIAASDK 203
>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1c protein.
Length = 1131
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 473 FNV*TCIVIS-VPLKPICIF*NEFFLVYFYIHVLLLKDK 586
F V TCI P + I + N FFLVYF+I + DK
Sbjct: 165 FQVETCIPWQDSPSQQIDLGFNIFFLVYFFIRFIAASDK 203
>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1b protein.
Length = 1118
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 473 FNV*TCIVIS-VPLKPICIF*NEFFLVYFYIHVLLLKDK 586
F V TCI P + I + N FFLVYF+I + DK
Sbjct: 165 FQVETCIPWQDSPSQQIDLGFNIFFLVYFFIRFIAASDK 203
>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans
large-conductance calcium-activatedpotassium channel
SLO-1a protein.
Length = 1140
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 473 FNV*TCIVIS-VPLKPICIF*NEFFLVYFYIHVLLLKDK 586
F V TCI P + I + N FFLVYF+I + DK
Sbjct: 165 FQVETCIPWQDSPSQQIDLGFNIFFLVYFFIRFIAASDK 203
>AC006624-3|AAF39786.2| 301|Caenorhabditis elegans Hypothetical
protein C53D5.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -1
Query: 350 ERGSMRISHRGAEPKRYRLQRRRAPYQCPSCENQF 246
E+ R R A + Q PY+C CE F
Sbjct: 206 EKSGKRAKKRAAPSSAHEAQPNNGPYKCRDCEKTF 240
>U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin family
protein 18 protein.
Length = 473
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 21 LNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADWAD 134
L + Y ++ +D I + CCG+NS D+ D
Sbjct: 137 LMTNYLNYNESMESRRLVDRIHIEYSCCGVNSIEDFVD 174
>DQ178635-1|ABD75714.1| 361|Caenorhabditis elegans tetraspanin
family protein protein.
Length = 361
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 21 LNASITQYPVDKNVQKTIDIIQTDLQCCGINSPADWAD 134
L + Y ++ +D I + CCG+NS D+ D
Sbjct: 25 LMTNYLNYNESMESRRLVDRIHIEYSCCGVNSIEDFVD 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,095,092
Number of Sequences: 27780
Number of extensions: 294288
Number of successful extensions: 899
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -