Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0635
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    47   2e-07
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    26   0.43 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   1.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.0  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 47.2 bits (107), Expect = 2e-07
 Identities = 25/70 (35%), Positives = 42/70 (60%)
 Frame = +3

Query: 42  YPVDKNVQKTIDIIQTDLQCCGINSPADWADHGLPIPSTCCSAQEINDGVVAACTENSTN 221
           Y ++   +  ID IQ +LQCCG++S +D+ D   PIP++CC++ E N       T + +N
Sbjct: 126 YFLNSESKDFIDFIQKNLQCCGVHSLSDYNDK--PIPASCCNSPENN-------TCSISN 176

Query: 222 FHSKGCLTKL 251
            ++ GC+  L
Sbjct: 177 SYTNGCVEAL 186


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = -1

Query: 308 KRYRLQRRRAPYQCPSCENQFS-KTSLRV 225
           + YR      PYQC  C   FS K +L V
Sbjct: 109 RHYRTHTGEKPYQCEYCSKSFSVKENLSV 137



 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 299 RLQRRRAPYQCPSCENQF 246
           R+  +  PY+C  CE  F
Sbjct: 140 RIHTKERPYKCDVCERAF 157


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
 Frame = -1

Query: 278 PYQCPSCENQFS-----KTSLRVEVG 216
           P++CP C  +F+     KT +R+  G
Sbjct: 9   PFECPECHKRFTRDHHLKTHMRLHTG 34


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 133 SAQSAGLFIPQHCKSVCMISIVFWT 59
           S+QSA + I +   ++C + ++ WT
Sbjct: 264 SSQSAEIRIAKAAITICFLYVLSWT 288


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 704 ERGKVSKISLLS*AHLSMLCNCTFNYYSKTN 612
           ER K  KI     + LS  CN + NYY+  N
Sbjct: 296 ERSKEPKII----SSLSNSCNYSNNYYNNNN 322


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 188  AVIDLLGGAARARYGQTVIGPVGRTVYTAALQV 90
            A+ID L  A R        GP GR+V +A L V
Sbjct: 967  ALIDELKPATRYTIRVIAEGPAGRSVPSAELIV 999


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 188  AVIDLLGGAARARYGQTVIGPVGRTVYTAALQV 90
            A+ID L  A R        GP GR+V +A L V
Sbjct: 963  ALIDELKPATRYTIRVIAEGPAGRSVPSAELIV 995


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,110
Number of Sequences: 438
Number of extensions: 3830
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)