Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0635
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa...    29   3.3  
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa...    29   3.3  
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea...    28   7.5  
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea...    28   7.5  

>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -2

Query: 295 SNAGEHHTNVLHVKTSLVR--HPFEWKLVEFSVQAATTPSLISWAEQHVLGMGRP*SAQS 122
           SN GE+ TN++H+  +L R  H + W    FS +A+    +   AE+       P S Q 
Sbjct: 348 SNTGENQTNIVHL-PALTRNIHQYAWD-ASFSSRASNPSGIGMPAERLGPQWETPRSNQE 405

Query: 121 AGLFIP 104
             LF P
Sbjct: 406 QPLFAP 411


>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -2

Query: 295 SNAGEHHTNVLHVKTSLVR--HPFEWKLVEFSVQAATTPSLISWAEQHVLGMGRP*SAQS 122
           SN GE+ TN++H+  +L R  H + W    FS +A+    +   AE+       P S Q 
Sbjct: 348 SNTGENQTNIVHL-PALTRNIHQYAWD-ASFSSRASNPSGIGMPAERLGPQWETPRSNQE 405

Query: 121 AGLFIP 104
             LF P
Sbjct: 406 QPLFAP 411


>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to cleavage stimulation factor 50K chain Homo
           sapiens, PIR:A45142
          Length = 337

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 183 DGVVAACTENSTNFHSKGCLTKLVFT-*RTLVWCSPALESVSLW 311
           DGV A C  +  N H K  +T  VFT  +  V  S    +V LW
Sbjct: 202 DGVSAKCVRSIGNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLW 245


>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to cleavage stimulation factor 50K chain Homo
           sapiens, PIR:A45142
          Length = 429

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 183 DGVVAACTENSTNFHSKGCLTKLVFT-*RTLVWCSPALESVSLW 311
           DGV A C  +  N H K  +T  VFT  +  V  S    +V LW
Sbjct: 294 DGVSAKCVRSIGNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLW 337


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,822,857
Number of Sequences: 28952
Number of extensions: 261648
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)