Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0633
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.7  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 560 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 667
           +D ++VGG      V   L +  N K L     PDE
Sbjct: 69  YDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDE 104


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 28  QRQATKDAGTISGLNVLRIINEPTAAAIAYG 120
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 20/70 (28%), Positives = 26/70 (37%)
 Frame = -2

Query: 276 CDCQSPHPQVGVAGGGFHLEDTILDGKDGHVEGTAAEVKDKYISFSSTLFVKTVSNRSSS 97
           CD  SPH QV + G         LD    H+  +   +  K      T +  T     SS
Sbjct: 254 CDESSPHDQVIIGGSNG------LDTSKVHIIDSICGIDSKPDYRELTEYSVTSVRLISS 307

Query: 96  RFIDDSENVQ 67
            F D+   VQ
Sbjct: 308 GFFDNFVTVQ 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,833
Number of Sequences: 438
Number of extensions: 4879
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)