Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0632
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit... 40 4e-04
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2... 28 1.8
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 27 2.4
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 3.2
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar... 26 5.5
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 5.5
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 7.3
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 26 7.3
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 26 7.3
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 9.6
>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
Tom40|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 39.9 bits (89), Expect = 4e-04
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 505 QSSDYSLALVAGKPDFNDK-SAMFVGHYLQSVTKRLALGAELVYQSGARIMGGEICIVSG 681
+ D+S + A P + +K + +++ LQSVT +L+LG E ++Q + +G E +S
Sbjct: 143 KGKDFSFSFKAMNPWYEEKLTGIYIISLLQSVTPKLSLGVEALWQKPSSSIGPEEATLSY 202
Query: 682 AARYTMDDSEVSATLSAA 735
RY D +A L+ +
Sbjct: 203 MTRYNAADWIATAHLNGS 220
>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 350 EISVLCQCMFHPICIHFVVSSLLMYETS 267
++ LCQC ++ C HF +S L++ T+
Sbjct: 78 DVYFLCQCTYYLACFHF-LSEWLLFRTT 104
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 136 FCKSVLVS-PELKTRYLLDIAPILL-NYSWNNC*SQKSINMWEK 11
+ +SV +S PE ++L D+ P+LL +Y W + WE+
Sbjct: 512 YLRSVSISNPEKSVQFLRDLFPLLLRHYEWFRETQKGDFETWER 555
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 412 PYTSTDTRDQGQRCCSNSRMQTDSY-TRHCGIQSSDYSLALVAGKPDFNDKSAMF 573
PY S D G+R S+ Q++ Y + G+ SS Y G P SAM+
Sbjct: 3 PYNSNYLSDNGKRKFSDENPQSEVYGSSQTGLPSS-YGNPQSYGTPPVQQSSAMY 56
>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 99 VFNSGLTSTDLQNIENDNKRENPGTLDELHKK 194
+F G+T TDLQ ++N + +P + + KK
Sbjct: 23 LFIYGVTRTDLQTLKNPSSLTSPSSSTSVDKK 54
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 625 LVYQSGARIMGGEICIVSGAARYTMDDSEV 714
L+Y SG + EICIV +Y + E+
Sbjct: 1181 LLYGSGTSTLYNEICIVHPEEKYICQEGEI 1210
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 290 SSQQNGYKLGGTYIGTKQISPTEAFPVVLGDVDPAGNVNCSLIHQLTPEIRVKGAAQIQE 469
S +Q GY + + + P + + + +G +DP VNC+ H L ++ K ++ +
Sbjct: 341 SFEQPGYPMNPSMMFAAMPPPIDPYSIFVGQLDP---VNCT--HYLLVDLFSK-YGKVID 394
Query: 470 CKL 478
CK+
Sbjct: 395 CKI 397
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = +3
Query: 126 DLQNIENDNKRENP------GTLDELHKKTKEVMPVNFEGGKLMV 242
D +N +NDN EN G ++ +E P N E GK+ +
Sbjct: 123 DGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFI 167
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 215 HRHHLFGFFMKFIQSPWIFSFVIIFYI 135
H H ++ FF++F +SP + + V YI
Sbjct: 212 HLHLVYDFFLRFFESPSLNTSVAKVYI 238
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 368 PGMPLSEISVLCQCMFHPICIHFVVSSLLMYE 273
P L IS L + FH + HF+ +YE
Sbjct: 666 PAQKLEAISTLVEKEFHSVVYHFIGIQRSLYE 697
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,698,828
Number of Sequences: 5004
Number of extensions: 82414
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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