Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0632
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23875| Best HMM Match : Porin_3 (HMM E-Value=3.22299e-44)           61   1e-09
SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07)             40   0.002
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   29   3.4  
SB_14489| Best HMM Match : DUF789 (HMM E-Value=5.6)                    29   4.5  
SB_15712| Best HMM Match : Cadherin (HMM E-Value=0)                    29   5.9  
SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_10048| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_23875| Best HMM Match : Porin_3 (HMM E-Value=3.22299e-44)
          Length = 270

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 33/100 (33%), Positives = 57/100 (57%)
 Frame = +1

Query: 505 QSSDYSLALVAGKPDFNDKSAMFVGHYLQSVTKRLALGAELVYQSGARIMGGEICIVSGA 684
           Q  D++  L  G  D  ++S + V HYLQ +  +L LGAEL+Y  G+   G EI ++S A
Sbjct: 96  QGKDFTANLTVGNLDLINESGIIVAHYLQRLAPKLDLGAELLYHYGS---GQEIAVMSLA 152

Query: 685 ARYTMDDSEVSATLSAANLHLCYFKQPANNSRL*LKWTHH 804
            RY+  +   +AT+  A  HL Y+ +   N ++ +++ ++
Sbjct: 153 GRYSASNWIGTATVGQAGWHLSYWHKGNENVQVGVEYEYN 192


>SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07)
          Length = 1248

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +2

Query: 359 AFPVVLGDVDPAGNVNCSLIHQLTPEIRVKGAAQ 460
           ++PV+LGD+D  G++N  +IHQ T  IR K   Q
Sbjct: 1   SYPVLLGDIDTTGSLNAQIIHQFTDRIRGKCVIQ 34


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 461 IQECKLTATQGTVEYKVQITALPWWRGNQTLTTSLQCLL-DIIC 589
           ++EC+L    G  +Y   +T + WWR N T TT L C +  I+C
Sbjct: 343 LRECRLLC--GKNDYSC-VTCIEWWRVN-TKTTRLPCFVRRILC 382


>SB_14489| Best HMM Match : DUF789 (HMM E-Value=5.6)
          Length = 382

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = +1

Query: 385 GPCR*CELQPYTSTDTRDQGQRCCSNSRMQTDSYTRHCGIQSSDYSLALVAGKPDFNDKS 564
           G C+   LQ    TDT +Q      N R+        CG +   +  A   GK D  D+ 
Sbjct: 223 GMCKMYCLQQRKFTDTIEQKTEVSKNGRLHMVGECSECGARKCKFISAKEGGKLDVQDQL 282

Query: 565 A 567
           A
Sbjct: 283 A 283


>SB_15712| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1075

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +2

Query: 431 PEIRVKGAAQIQECKLTATQGTVEYKVQITALPWWRGNQT 550
           PE+       I     T   GT+ Y ++  A PW+R N +
Sbjct: 24  PEVNTTAGTIITRLTATGGNGTITYSLEDIAHPWFRINSS 63


>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 399  LPAGSTSPSTTGNASVGDICFVPMYVPPNLYPFCCELIV 283
            +P  S +        VGD C V +++P N  P  C L++
Sbjct: 1806 IPGASEAEKRLLETDVGDDCPVALFLPSNSGPGTCSLVL 1844


>SB_10048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 717 GHTERCQPALVLLQATSEQLQVVAEMDTS 803
           GHT +C  ALVLL      +Q+  E D +
Sbjct: 322 GHTRKCAEALVLLGQADRAVQLFLETDAT 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,223,630
Number of Sequences: 59808
Number of extensions: 646960
Number of successful extensions: 1475
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)