Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0632
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   1.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   4.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   4.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.4  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   7.7  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   7.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   7.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 166 GFSRLLSFSIFCKSVLVSPELKTRYLLDIAPILLNYSWNN 47
           G SR   ++ F KSV +   L    L+ I+ +L    +NN
Sbjct: 204 GLSRQAEYTDFLKSVPIFKNLPEETLIKISDVLEETFYNN 243


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 377 QAPPGMPLSEISVLCQCMFHPICIHFVV 294
           + PPG P+ E +  C C     CI+ VV
Sbjct: 464 RVPPGTPIYECNKRCNCDID--CINRVV 489


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 453 APLTLISGVS*CIRLQFTLPAGSTSPSTTGNAS 355
           AP T I+ ++       T    +T+P+TT NAS
Sbjct: 653 APATTITTITTTTTTTTTTTTTTTTPNTTQNAS 685


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 354 VGDICFVPMYVPPNLYPF 301
           +G +   P ++PPN Y F
Sbjct: 148 IGPLTPFPRFIPPNAYRF 165


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 354 VGDICFVPMYVPPNLYPF 301
           +G +   P ++PPN Y F
Sbjct: 389 IGPLTPFPRFIPPNAYRF 406


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 719 PH*ALPTCTCATSSNQRTTPGCS*NGHI 802
           P+  +  C C     +R  P C+ NG I
Sbjct: 97  PNSTIAVCVCMRKCPRRHRPVCASNGKI 124


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 333 PMYVPPNLYPF 301
           P ++PPN Y F
Sbjct: 160 PQFIPPNAYKF 170


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 354 VGDICFVPMYVPPNLYPF 301
           +G     P ++PPN Y F
Sbjct: 378 IGPSTSFPRFIPPNAYRF 395


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 333 PMYVPPNLYPF 301
           P ++PPN+Y F
Sbjct: 377 PRFIPPNVYRF 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,698
Number of Sequences: 438
Number of extensions: 5817
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)