Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0632
         (809 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33350.1 68415.m04088 hypothetical protein                          34   0.13 
At3g20000.1 68416.m02530 porin family protein low similarity to ...    30   1.6  
At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloropla...    29   3.7  
At1g27290.1 68414.m03325 expressed protein                             29   3.7  

>At2g33350.1 68415.m04088 hypothetical protein
          Length = 440

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
 Frame = +3

Query: 15  SHMLIDFCD*QLFHE*FSKMGAISSRYRV------FNSGL-TSTDLQNIENDNKRENPGT 173
           S  + DFCD QLF E F++   ++S   +      F+S   T+T  +N  N+N  +N   
Sbjct: 54  SAQIFDFCDPQLFQETFNQSSEVTSTSNILEKSGSFHSNTNTTTTTENSNNNNNNKNTNL 113

Query: 174 LDE 182
            D+
Sbjct: 114 QDD 116


>At3g20000.1 68416.m02530 porin family protein low similarity to
           haymaker protein [Mus musculus] GI:17834089,
           mitochondrial outer membrane protein MOM35 [Mus
           musculus] GI:6650562; contains Pfam profile PF01459:
           Eukaryotic porin
          Length = 309

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 559 KSAMFVGHYLQSVTKRLALGAELVYQSGARIMGGEICIVSGAARYTMDDSEVSATLSA 732
           +SA+    Y+QSVT  L+LG E+ +    R  G     +  AARY  D    S  +++
Sbjct: 165 QSALIGATYIQSVTNHLSLGGEIFWAGVPRKSG-----IGYAARYETDKMVASGQVAS 217


>At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloroplast,
           putative / O-succinylhomoserine (Thiol)-lyase, putative
           strong similarity to SP|P55217 Cystathionine
           gamma-synthase, chloroplast precursor (EC 4.2.99.9)
           (CGS) (O-succinylhomoserine (Thiol)-lyase) {Arabidopsis
           thaliana}; contains Pfam profile PF01053: Cys/Met
           metabolism PLP-dependent enzyme
          Length = 412

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 601 KRLALGAELVYQSGARIMGGEICIVSGAARYTMD 702
           K LALGA+LV+ S  + +GG    ++G+   +M+
Sbjct: 214 KTLALGADLVHHSATKYIGGHNDFLAGSISGSME 247


>At1g27290.1 68414.m03325 expressed protein
          Length = 142

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -1

Query: 194 FFMKFIQSPWIFSFVIIFYI 135
           FF+ F+  PW+ + +++FY+
Sbjct: 88  FFIGFLLMPWVLALILVFYV 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,559,543
Number of Sequences: 28952
Number of extensions: 441208
Number of successful extensions: 1152
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)