Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0630
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 120 2e-28
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 120 2e-28
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 27 1.4
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 27 1.4
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 4.4
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 25 5.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 5.8
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 25 5.8
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 120 bits (288), Expect = 2e-28
Identities = 55/70 (78%), Positives = 62/70 (88%)
Frame = +3
Query: 255 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 434
LIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL
Sbjct: 74 LIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSAL 133
Query: 435 YKEKKERPRS 464
+ EKKE+PR+
Sbjct: 134 FHEKKEKPRA 143
Score = 119 bits (286), Expect = 3e-28
Identities = 51/80 (63%), Positives = 66/80 (82%)
Frame = +1
Query: 37 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLDKVGVQAK 216
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV++K+GV+AK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 217 QPNSAIRKCVRVHSLRTERK 276
QPNSAIRKCVRV ++ +K
Sbjct: 61 QPNSAIRKCVRVQLIKNGKK 80
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 120 bits (288), Expect = 2e-28
Identities = 55/70 (78%), Positives = 62/70 (88%)
Frame = +3
Query: 255 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 434
LIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL
Sbjct: 74 LIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSAL 133
Query: 435 YKEKKERPRS 464
+ EKKE+PR+
Sbjct: 134 FHEKKEKPRA 143
Score = 119 bits (286), Expect = 3e-28
Identities = 51/80 (63%), Positives = 66/80 (82%)
Frame = +1
Query: 37 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLDKVGVQAK 216
MGKP G+ ARK NHRRE+RWAD +KK +GT +K++PFGG+SHAKGIV++K+GV+AK
Sbjct: 1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60
Query: 217 QPNSAIRKCVRVHSLRTERK 276
QPNSAIRKCVRV ++ +K
Sbjct: 61 QPNSAIRKCVRVQLIKNGKK 80
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 163 GASHAKGIVLDKVGVQAKQPNSAIRKCVRV 252
G+ +G+ V+ K+PNSA+RK RV
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARV 76
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 216 AAQLCHPQMRPCTLIKNGKKVTAFVPRDGCLNHIEEN 326
A ++ HP C+ ++N K V +D C+ H++ N
Sbjct: 428 AVRISHPSTTFCSNVENDIKEIFEVCKDYCMLHVQNN 464
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 403 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 293
+++K P + P P P+ AT+TSS +++ PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 100 WADKEFKKAHMGTKWKANPFGGASHAKGIV 189
W D EF H K+ PF +H K V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 106 PPIAVHDGGSRAYAP 62
PP AV GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 461 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 339
SW L+++ V S+E+ GY L N+ D G+ ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,379
Number of Sequences: 5004
Number of extensions: 53030
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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