Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0630
(565 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 139 2e-33
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 128 3e-30
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1) 29 2.0
SB_3221| Best HMM Match : rve (HMM E-Value=3) 29 2.0
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 28 4.6
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 28 4.6
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0) 28 6.1
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08) 27 8.0
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20) 27 8.0
SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06) 27 8.0
>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 143
Score = 139 bits (336), Expect = 2e-33
Identities = 63/70 (90%), Positives = 69/70 (98%)
Frame = +3
Query: 255 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 434
LIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL
Sbjct: 74 LIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLAL 133
Query: 435 YKEKKERPRS 464
+KEKKERPRS
Sbjct: 134 FKEKKERPRS 143
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +1
Query: 202 GVQAKQPNSAIRKCVRVHSLRTERK 276
GV+AKQPNSAIRKCVRV ++ +K
Sbjct: 56 GVEAKQPNSAIRKCVRVQLIKNGKK 80
>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
Length = 413
Score = 128 bits (309), Expect = 3e-30
Identities = 57/78 (73%), Positives = 68/78 (87%)
Frame = +1
Query: 43 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLDKVGVQAKQP 222
KPRG+RTARK +HRR+Q+W DK +KKAH+GT KANPFGGASHAKGIVL+KVGV+AKQP
Sbjct: 2 KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61
Query: 223 NSAIRKCVRVHSLRTERK 276
NSAIRKCVRV ++ +K
Sbjct: 62 NSAIRKCVRVQLIKNGKK 79
Score = 92.3 bits (219), Expect = 2e-19
Identities = 38/45 (84%), Positives = 44/45 (97%)
Frame = +3
Query: 255 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 389
LIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 73 LIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117
>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 123 SPHGYEMEG*PFRWCISRKGHRPRQSWCTS*AA 221
S HG MEG P W +S G P+ S C S +A
Sbjct: 85 SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117
>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
Length = 488
Score = 29.5 bits (63), Expect = 2.0
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Frame = -3
Query: 254 CTRTHLRMAELGCLACTPTLSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCS 90
C + E+ C PT R T DA P GL H M L+ + RC
Sbjct: 60 CQLDYPNYREMPCQLDCPTTERCPANWTTQLQRDALPTGLPKHR-EMPCQLDYPTTERCP 118
Query: 89 RRWFTCLRAVRIPRGLP 39
W T L+ +P GLP
Sbjct: 119 ANWTTQLQRDALPTGLP 135
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = -3
Query: 227 ELGCLACTPTLSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 63
E+ C PT R T DA P GL ++ M L+ + RC W T L+
Sbjct: 139 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMSCQLDYPTTERCPANWTTQLQR 197
Query: 62 VRIPRGLP 39
+P GLP
Sbjct: 198 DTLPTGLP 205
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = -3
Query: 227 ELGCLACTPTLSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 63
E+ C PT R T DA P GL ++ M L+ + RC W T L+
Sbjct: 104 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMPCQLDYPTTERCPANWTTQLQR 162
Query: 62 VRIPRGLP 39
+P GLP
Sbjct: 163 DALPTGLP 170
>SB_3221| Best HMM Match : rve (HMM E-Value=3)
Length = 324
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = -1
Query: 487 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWF 308
S T TYDL SF+S+ + + LAT +K++P + + L+P A S S
Sbjct: 9 SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKPR-ANCASIASETLA 66
Query: 307 RQPSRGTNAV 278
+Q R N V
Sbjct: 67 QQCWRSLNTV 76
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 430 LSTKRKRSDQDHRCTL**VTCCREARFYKFIKCKILXHNKYCVQ 561
+S+KR RS+ + C V CC E F KC K CV+
Sbjct: 1 MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCVR 40
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 430 LSTKRKRSDQDHRCTL**VTCCREARFYKFIKCKILXHNKYCVQ 561
+S+KR RS+ + C V CC E F KC K CV+
Sbjct: 1 MSSKRTRSESSNLC----VVCCEEIEFSAVGKCDHPVCYKCCVR 40
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -3
Query: 191 RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 96
R +PF+ APPKG F VP+W +F N S+ HR
Sbjct: 902 RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936
>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
Length = 1465
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 260 NECTRTHLRMAELGCLACTPTLSRTM 183
++C+ H +ELGCLAC L ++
Sbjct: 1064 DQCSIDHYAFSELGCLACNCNLQGSL 1089
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = -2
Query: 303 NRHGGRMRSLSFRS--**VYTDAFADGRVGLLSLYTNFVEDDALCVRCTTE-RVSLPFRT 133
+R+GGRM+SL+ RS V D + + + + ED++ + +T + LP+RT
Sbjct: 1851 SRNGGRMKSLANRSGRNGVIRDLLGSQALDTAASFESLTEDESAAITGSTVCSIPLPYRT 1910
>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
Length = 961
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 211 LVHQLCRGRCPLREMHHRKG*PSISYPCGL 122
LV+ CRG C + G PSIS P L
Sbjct: 641 LVNTACRGSCKFLKALFNNGKPSISNPANL 670
>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
Length = 255
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 83 TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 175
T V R N++KP +R+GR+T+S+ +T
Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133
>SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
Length = 256
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 115 ILCPPIAVHDGGSRAYAPFV 56
++ PP + DG SRA+APF+
Sbjct: 215 LIKPPSTIVDGRSRAHAPFI 234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,657,078
Number of Sequences: 59808
Number of extensions: 451148
Number of successful extensions: 1042
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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