Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0630
         (565 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S...   139   5e-33
CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.               139   5e-33
BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23 p...   139   5e-33
AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23 p...   119   8e-27
Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal p...    34   0.40 
CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.               34   0.40 
BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal...    34   0.40 
BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal...    34   0.40 
BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal...    34   0.40 
AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12 p...    34   0.40 
AB029290-1|BAA83821.1| 5430|Homo sapiens actin binding protein A...    30   4.9  

>D14530-1|BAA03400.1|  143|Homo sapiens yeast ribosomal protein S28
           homologue protein.
          Length = 143

 Score =  139 bits (337), Expect = 5e-33
 Identities = 66/70 (94%), Positives = 67/70 (95%)
 Frame = +3

Query: 255 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 434
           LIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL
Sbjct: 74  LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133

Query: 435 YKEKKERPRS 464
           YK KKERPRS
Sbjct: 134 YKGKKERPRS 143



 Score =  130 bits (313), Expect = 4e-30
 Identities = 58/80 (72%), Positives = 70/80 (87%)
 Frame = +1

Query: 37  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLDKVGVQAK 216
           MGK RG+RTARK  +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVL+KVGV+AK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 217 QPNSAIRKCVRVHSLRTERK 276
           QPNSAIRKCVRV  ++  +K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80


>CR456996-1|CAG33277.1|  143|Homo sapiens RPS23 protein.
          Length = 143

 Score =  139 bits (337), Expect = 5e-33
 Identities = 66/70 (94%), Positives = 67/70 (95%)
 Frame = +3

Query: 255 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 434
           LIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL
Sbjct: 74  LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133

Query: 435 YKEKKERPRS 464
           YK KKERPRS
Sbjct: 134 YKGKKERPRS 143



 Score =  130 bits (313), Expect = 4e-30
 Identities = 58/80 (72%), Positives = 70/80 (87%)
 Frame = +1

Query: 37  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLDKVGVQAK 216
           MGK RG+RTARK  +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVL+KVGV+AK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 217 QPNSAIRKCVRVHSLRTERK 276
           QPNSAIRKCVRV  ++  +K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80


>BC070221-1|AAH70221.1|  143|Homo sapiens ribosomal protein S23
           protein.
          Length = 143

 Score =  139 bits (337), Expect = 5e-33
 Identities = 66/70 (94%), Positives = 67/70 (95%)
 Frame = +3

Query: 255 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 434
           LIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL
Sbjct: 74  LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133

Query: 435 YKEKKERPRS 464
           YK KKERPRS
Sbjct: 134 YKGKKERPRS 143



 Score =  130 bits (313), Expect = 4e-30
 Identities = 58/80 (72%), Positives = 70/80 (87%)
 Frame = +1

Query: 37  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLDKVGVQAK 216
           MGK RG+RTARK  +HRR+Q+W DK++KKAH+GT  KANPFGGASHAKGIVL+KVGV+AK
Sbjct: 1   MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60

Query: 217 QPNSAIRKCVRVHSLRTERK 276
           QPNSAIRKCVRV  ++  +K
Sbjct: 61  QPNSAIRKCVRVQLIKNGKK 80


>AB007158-1|BAA25822.1|   59|Homo sapiens ribosomal protein S23
           protein.
          Length = 59

 Score =  119 bits (286), Expect = 8e-27
 Identities = 56/59 (94%), Positives = 56/59 (94%)
 Frame = +3

Query: 285 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 461
           FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 1   FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59


>Y11681-2|CAA72377.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 precursor protein.
          Length = 138

 Score = 33.9 bits (74), Expect = 0.40
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = +1

Query: 145 KANPFGGASHAKGIVLDKVGVQAKQPNSAIRKCVRVHSLRTERK 276
           K  P  G    KG+VL     + K+PNSA RKC RV  L T R+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVR-LSTGRE 90


>CR407609-1|CAG28537.1|  138|Homo sapiens MRPS12 protein.
          Length = 138

 Score = 33.9 bits (74), Expect = 0.40
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = +1

Query: 145 KANPFGGASHAKGIVLDKVGVQAKQPNSAIRKCVRVHSLRTERK 276
           K  P  G    KG+VL     + K+PNSA RKC RV  L T R+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVR-LSTGRE 90


>BC007499-1|AAH07499.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 33.9 bits (74), Expect = 0.40
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = +1

Query: 145 KANPFGGASHAKGIVLDKVGVQAKQPNSAIRKCVRVHSLRTERK 276
           K  P  G    KG+VL     + K+PNSA RKC RV  L T R+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVR-LSTGRE 90


>BC006424-1|AAH06424.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 33.9 bits (74), Expect = 0.40
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = +1

Query: 145 KANPFGGASHAKGIVLDKVGVQAKQPNSAIRKCVRVHSLRTERK 276
           K  P  G    KG+VL     + K+PNSA RKC RV  L T R+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVR-LSTGRE 90


>BC001617-1|AAH01617.1|  138|Homo sapiens mitochondrial ribosomal
           protein S12 protein.
          Length = 138

 Score = 33.9 bits (74), Expect = 0.40
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = +1

Query: 145 KANPFGGASHAKGIVLDKVGVQAKQPNSAIRKCVRVHSLRTERK 276
           K  P  G    KG+VL     + K+PNSA RKC RV  L T R+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVR-LSTGRE 90


>AF058761-1|AAC64704.1|  138|Homo sapiens ribosomal protein S12
           protein.
          Length = 138

 Score = 33.9 bits (74), Expect = 0.40
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = +1

Query: 145 KANPFGGASHAKGIVLDKVGVQAKQPNSAIRKCVRVHSLRTERK 276
           K  P  G    KG+VL     + K+PNSA RKC RV  L T R+
Sbjct: 48  KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVR-LSTGRE 90


>AB029290-1|BAA83821.1| 5430|Homo sapiens actin binding protein
           ABP620 protein.
          Length = 5430

 Score = 30.3 bits (65), Expect = 4.9
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -1

Query: 406 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQPSRGTNAVTFFPFLMSVHGRIC 236
           FT+L+  P  + T   L+  P T +T S S+ WFR+P          P  M     +C
Sbjct: 532 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKPMTRAELGPSAPLKMKAISDLC 589


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,226,869
Number of Sequences: 237096
Number of extensions: 2068247
Number of successful extensions: 9221
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9221
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)