BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0630 (565 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 139 5e-33 CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 139 5e-33 BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 139 5e-33 AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 119 8e-27 Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 34 0.40 CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 34 0.40 BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 34 0.40 BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 34 0.40 BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 34 0.40 AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 34 0.40 AB029290-1|BAA83821.1| 5430|Homo sapiens actin binding protein A... 30 4.9 >D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28 homologue protein. Length = 143 Score = 139 bits (337), Expect = 5e-33 Identities = 66/70 (94%), Positives = 67/70 (95%) Frame = +3 Query: 255 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 434 LIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL Sbjct: 74 LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133 Query: 435 YKEKKERPRS 464 YK KKERPRS Sbjct: 134 YKGKKERPRS 143 Score = 130 bits (313), Expect = 4e-30 Identities = 58/80 (72%), Positives = 70/80 (87%) Frame = +1 Query: 37 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLDKVGVQAK 216 MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL+KVGV+AK Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60 Query: 217 QPNSAIRKCVRVHSLRTERK 276 QPNSAIRKCVRV ++ +K Sbjct: 61 QPNSAIRKCVRVQLIKNGKK 80 >CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. Length = 143 Score = 139 bits (337), Expect = 5e-33 Identities = 66/70 (94%), Positives = 67/70 (95%) Frame = +3 Query: 255 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 434 LIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL Sbjct: 74 LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133 Query: 435 YKEKKERPRS 464 YK KKERPRS Sbjct: 134 YKGKKERPRS 143 Score = 130 bits (313), Expect = 4e-30 Identities = 58/80 (72%), Positives = 70/80 (87%) Frame = +1 Query: 37 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLDKVGVQAK 216 MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL+KVGV+AK Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60 Query: 217 QPNSAIRKCVRVHSLRTERK 276 QPNSAIRKCVRV ++ +K Sbjct: 61 QPNSAIRKCVRVQLIKNGKK 80 >BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 protein. Length = 143 Score = 139 bits (337), Expect = 5e-33 Identities = 66/70 (94%), Positives = 67/70 (95%) Frame = +3 Query: 255 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 434 LIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL Sbjct: 74 LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133 Query: 435 YKEKKERPRS 464 YK KKERPRS Sbjct: 134 YKGKKERPRS 143 Score = 130 bits (313), Expect = 4e-30 Identities = 58/80 (72%), Positives = 70/80 (87%) Frame = +1 Query: 37 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLDKVGVQAK 216 MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVL+KVGV+AK Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60 Query: 217 QPNSAIRKCVRVHSLRTERK 276 QPNSAIRKCVRV ++ +K Sbjct: 61 QPNSAIRKCVRVQLIKNGKK 80 >AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 protein. Length = 59 Score = 119 bits (286), Expect = 8e-27 Identities = 56/59 (94%), Positives = 56/59 (94%) Frame = +3 Query: 285 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 461 FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59 >Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal protein S12 precursor protein. Length = 138 Score = 33.9 bits (74), Expect = 0.40 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = +1 Query: 145 KANPFGGASHAKGIVLDKVGVQAKQPNSAIRKCVRVHSLRTERK 276 K P G KG+VL + K+PNSA RKC RV L T R+ Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVR-LSTGRE 90 >CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. Length = 138 Score = 33.9 bits (74), Expect = 0.40 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = +1 Query: 145 KANPFGGASHAKGIVLDKVGVQAKQPNSAIRKCVRVHSLRTERK 276 K P G KG+VL + K+PNSA RKC RV L T R+ Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVR-LSTGRE 90 >BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal protein S12 protein. Length = 138 Score = 33.9 bits (74), Expect = 0.40 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = +1 Query: 145 KANPFGGASHAKGIVLDKVGVQAKQPNSAIRKCVRVHSLRTERK 276 K P G KG+VL + K+PNSA RKC RV L T R+ Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVR-LSTGRE 90 >BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal protein S12 protein. Length = 138 Score = 33.9 bits (74), Expect = 0.40 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = +1 Query: 145 KANPFGGASHAKGIVLDKVGVQAKQPNSAIRKCVRVHSLRTERK 276 K P G KG+VL + K+PNSA RKC RV L T R+ Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVR-LSTGRE 90 >BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal protein S12 protein. Length = 138 Score = 33.9 bits (74), Expect = 0.40 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = +1 Query: 145 KANPFGGASHAKGIVLDKVGVQAKQPNSAIRKCVRVHSLRTERK 276 K P G KG+VL + K+PNSA RKC RV L T R+ Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVR-LSTGRE 90 >AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 protein. Length = 138 Score = 33.9 bits (74), Expect = 0.40 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = +1 Query: 145 KANPFGGASHAKGIVLDKVGVQAKQPNSAIRKCVRVHSLRTERK 276 K P G KG+VL + K+PNSA RKC RV L T R+ Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVR-LSTGRE 90 >AB029290-1|BAA83821.1| 5430|Homo sapiens actin binding protein ABP620 protein. Length = 5430 Score = 30.3 bits (65), Expect = 4.9 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = -1 Query: 406 FTTLKRTPGMSPTA*PLRPNPAT-STSSFSSMWFRQPSRGTNAVTFFPFLMSVHGRIC 236 FT+L+ P + T L+ P T +T S S+ WFR+P P M +C Sbjct: 532 FTSLELVPPSTLTTTHLKAEPLTKATHSSSTSWFRKPMTRAELGPSAPLKMKAISDLC 589 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 90,226,869 Number of Sequences: 237096 Number of extensions: 2068247 Number of successful extensions: 9221 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 9085 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9221 length of database: 76,859,062 effective HSP length: 86 effective length of database: 56,468,806 effective search space used: 5703349406 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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