Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0630
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   134   3e-32
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   134   3e-32
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   5.0  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   5.0  
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P...    27   8.7  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  134 bits (325), Expect = 3e-32
 Identities = 61/70 (87%), Positives = 67/70 (95%)
 Frame = +3

Query: 255 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 434
           LIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL
Sbjct: 73  LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLAL 132

Query: 435 YKEKKERPRS 464
           +KEKKE+PRS
Sbjct: 133 FKEKKEKPRS 142



 Score =  107 bits (257), Expect = 5e-24
 Identities = 47/80 (58%), Positives = 61/80 (76%)
 Frame = +1

Query: 37  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLDKVGVQAK 216
           MGK RG+   RK    R  QRWADK++KK+H+G +WK  PF G+SHAKGIVL+K+G++AK
Sbjct: 1   MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59

Query: 217 QPNSAIRKCVRVHSLRTERK 276
           QPNSAIRKC RV  ++  +K
Sbjct: 60  QPNSAIRKCARVQLIKNGKK 79


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  134 bits (325), Expect = 3e-32
 Identities = 61/70 (87%), Positives = 67/70 (95%)
 Frame = +3

Query: 255 LIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 434
           LIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL
Sbjct: 73  LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLAL 132

Query: 435 YKEKKERPRS 464
           +KEKKE+PRS
Sbjct: 133 FKEKKEKPRS 142



 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 45/80 (56%), Positives = 58/80 (72%)
 Frame = +1

Query: 37  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLDKVGVQAK 216
           MGK RG+   RK    R  QRWADK +KK++ G +WK  PF  +SHAKGIVL+K+G++AK
Sbjct: 1   MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59

Query: 217 QPNSAIRKCVRVHSLRTERK 276
           QPNSAIRKC RV  ++  +K
Sbjct: 60  QPNSAIRKCARVQLIKNGKK 79


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 100 WADKEFKKAHMGTKWKANPFGGASHAKG 183
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 100 WADKEFKKAHMGTKWKANPFGGASHAKG 183
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
           At1g25886, At4g03300
          Length = 1312

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 261 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 422
           K  KK +  VP+      + E D+V   GF  K   V D+P  + +VV +  NVS
Sbjct: 819 KEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,400,248
Number of Sequences: 28952
Number of extensions: 295672
Number of successful extensions: 734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)