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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0628
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   159   4e-40
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   159   4e-40
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   159   4e-40
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...   117   1e-27
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   3.3  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   4.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   5.7  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.6  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  159 bits (385), Expect = 4e-40
 Identities = 77/84 (91%), Positives = 80/84 (95%)
 Frame = +3

Query: 3   IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
           IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLC
Sbjct: 52  IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLC 111

Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
           AIH KRVTI PKD+QLARR+RGER
Sbjct: 112 AIHGKRVTIQPKDMQLARRLRGER 135


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  159 bits (385), Expect = 4e-40
 Identities = 77/84 (91%), Positives = 80/84 (95%)
 Frame = +3

Query: 3   IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
           IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLC
Sbjct: 52  IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLC 111

Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
           AIH KRVTI PKD+QLARR+RGER
Sbjct: 112 AIHGKRVTIQPKDMQLARRLRGER 135


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  159 bits (385), Expect = 4e-40
 Identities = 77/84 (91%), Positives = 80/84 (95%)
 Frame = +3

Query: 3   IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
           IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLC
Sbjct: 52  IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLC 111

Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
           AIH KRVTI PKD+QLARR+RGER
Sbjct: 112 AIHGKRVTIQPKDMQLARRLRGER 135


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score =  117 bits (282), Expect = 1e-27
 Identities = 60/88 (68%), Positives = 74/88 (84%), Gaps = 6/88 (6%)
 Frame = +3

Query: 3   IRRYQKSTELLIRKLPFQRLVREIAQDF----KTD--LRFQSAAIGALQEASEAYLVGLF 164
           IR+YQ+ST+LLI++LPF R+VREI+ +F     TD  LR+QS A+  LQEA+EA+LV LF
Sbjct: 32  IRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLF 91

Query: 165 EDTNLCAIHAKRVTIMPKDIQLARRIRG 248
           EDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct: 92  EDTNLCAIHAKRVTIMQRDMQLARRIRG 119


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -2

Query: 218 LRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLETQI-SFEILSDFSHKTLERQL 42
           LR+   T  +    + +  QA        LE S     + Q+ SFEIL     +TLE   
Sbjct: 73  LRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESS 132

Query: 41  TDKQLSR 21
           ++  +SR
Sbjct: 133 SNPNISR 139


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 179 QVGVFEQANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTN 3
           Q+G F +AN I  A  + +      E +   EIL        ER L+ K+ +R   T+N
Sbjct: 112 QIGAFFKANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPER-LSTKKGNRSHTTSN 169


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 3   IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAAIGALQEASEAYLVGLFE 167
           + +++ S  LLI   P Q  +RE+A   DF    +F   +   + A  E  EAY+  L E
Sbjct: 524 LSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYIRSLQE 583


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 134 LLESSDGGRLETQISFEILSD 72
           L  + DGG+LE Q+ +++L D
Sbjct: 72  LFTTDDGGKLELQVYYQLLVD 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,470
Number of Sequences: 5004
Number of extensions: 48152
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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