BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0628 (675 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 159 4e-40 SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 159 4e-40 SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 159 4e-40 SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 117 1e-27 SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 3.3 SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 4.3 SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 5.7 SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 7.6 >SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr 1|||Manual Length = 136 Score = 159 bits (385), Expect = 4e-40 Identities = 77/84 (91%), Positives = 80/84 (95%) Frame = +3 Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLC Sbjct: 52 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLC 111 Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254 AIH KRVTI PKD+QLARR+RGER Sbjct: 112 AIHGKRVTIQPKDMQLARRLRGER 135 >SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr 2|||Manual Length = 136 Score = 159 bits (385), Expect = 4e-40 Identities = 77/84 (91%), Positives = 80/84 (95%) Frame = +3 Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLC Sbjct: 52 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLC 111 Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254 AIH KRVTI PKD+QLARR+RGER Sbjct: 112 AIHGKRVTIQPKDMQLARRLRGER 135 >SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pombe|chr 2|||Manual Length = 136 Score = 159 bits (385), Expect = 4e-40 Identities = 77/84 (91%), Positives = 80/84 (95%) Frame = +3 Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLC Sbjct: 52 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLC 111 Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254 AIH KRVTI PKD+QLARR+RGER Sbjct: 112 AIHGKRVTIQPKDMQLARRLRGER 135 >SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||Manual Length = 120 Score = 117 bits (282), Expect = 1e-27 Identities = 60/88 (68%), Positives = 74/88 (84%), Gaps = 6/88 (6%) Frame = +3 Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDF----KTD--LRFQSAAIGALQEASEAYLVGLF 164 IR+YQ+ST+LLI++LPF R+VREI+ +F TD LR+QS A+ LQEA+EA+LV LF Sbjct: 32 IRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLF 91 Query: 165 EDTNLCAIHAKRVTIMPKDIQLARRIRG 248 EDTNLCAIHAKRVTIM +D+QLARRIRG Sbjct: 92 EDTNLCAIHAKRVTIMQRDMQLARRIRG 119 >SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3071 Score = 26.6 bits (56), Expect = 3.3 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Frame = -2 Query: 218 LRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLETQI-SFEILSDFSHKTLERQL 42 LR+ T + + + QA LE S + Q+ SFEIL +TLE Sbjct: 73 LRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESS 132 Query: 41 TDKQLSR 21 ++ +SR Sbjct: 133 SNPNISR 139 >SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 1405 Score = 26.2 bits (55), Expect = 4.3 Identities = 18/59 (30%), Positives = 27/59 (45%) Frame = -2 Query: 179 QVGVFEQANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTN 3 Q+G F +AN I A + + E + EIL ER L+ K+ +R T+N Sbjct: 112 QIGAFFKANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPER-LSTKKGNRSHTTSN 169 >SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1388 Score = 25.8 bits (54), Expect = 5.7 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Frame = +3 Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAAIGALQEASEAYLVGLFE 167 + +++ S LLI P Q +RE+A DF +F + + A E EAY+ L E Sbjct: 524 LSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYIRSLQE 583 >SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual Length = 612 Score = 25.4 bits (53), Expect = 7.6 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -2 Query: 134 LLESSDGGRLETQISFEILSD 72 L + DGG+LE Q+ +++L D Sbjct: 72 LFTTDDGGKLELQVYYQLLVD 92 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,560,470 Number of Sequences: 5004 Number of extensions: 48152 Number of successful extensions: 110 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 109 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 309878492 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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