Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0628
(675 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65360.1 68418.m08221 histone H3 identical to histone H3 from... 164 6e-41
At5g10400.1 68418.m01206 histone H3 identical to several histone... 164 6e-41
At5g10390.1 68418.m01205 histone H3 identical to histone H3 from... 164 6e-41
At3g27360.1 68416.m03421 histone H3 identical to histone H3 from... 164 6e-41
At1g09200.1 68414.m01027 histone H3 identical to histone H3 from... 164 6e-41
At5g65350.1 68418.m08220 histone H3 nearly identical to histone ... 162 2e-40
At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2, M... 161 4e-40
At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,... 161 4e-40
At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,... 161 4e-40
At1g75600.1 68414.m08784 histone H3.2, putative strong similarit... 159 1e-39
At1g13370.1 68414.m01554 histone H3, putative strong similarity ... 155 2e-38
At1g19890.1 68414.m02494 histone H3, putative similar to histone... 155 3e-38
At5g12910.1 68418.m01481 histone H3, putative similar to histone... 141 4e-34
At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12) si... 82 4e-16
At5g66410.1 68418.m08376 expressed protein 30 1.6
At1g18350.1 68414.m02293 mitogen-activated protein kinase kinase... 28 6.6
At1g01230.1 68414.m00038 ORMDL family protein contains Pfam doma... 28 6.6
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 27 8.7
At4g04570.1 68417.m00670 protein kinase family protein contains ... 27 8.7
>At5g65360.1 68418.m08221 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 164 bits (398), Expect = 6e-41
Identities = 79/84 (94%), Positives = 83/84 (98%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
IR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLC
Sbjct: 52 IRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLC 111
Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
AIHAKRVTIMPKDIQLARRIRGER
Sbjct: 112 AIHAKRVTIMPKDIQLARRIRGER 135
>At5g10400.1 68418.m01206 histone H3 identical to several histone H3
proteins, including Zea mays SP|P05203, Medicago sativa
GI:166384, Encephalartos altensteinii SP|P08903, Pisum
sativum SP|P02300; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4
Length = 136
Score = 164 bits (398), Expect = 6e-41
Identities = 79/84 (94%), Positives = 83/84 (98%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
IR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLC
Sbjct: 52 IRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLC 111
Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
AIHAKRVTIMPKDIQLARRIRGER
Sbjct: 112 AIHAKRVTIMPKDIQLARRIRGER 135
>At5g10390.1 68418.m01205 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 164 bits (398), Expect = 6e-41
Identities = 79/84 (94%), Positives = 83/84 (98%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
IR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLC
Sbjct: 52 IRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLC 111
Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
AIHAKRVTIMPKDIQLARRIRGER
Sbjct: 112 AIHAKRVTIMPKDIQLARRIRGER 135
>At3g27360.1 68416.m03421 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 164 bits (398), Expect = 6e-41
Identities = 79/84 (94%), Positives = 83/84 (98%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
IR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLC
Sbjct: 52 IRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLC 111
Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
AIHAKRVTIMPKDIQLARRIRGER
Sbjct: 112 AIHAKRVTIMPKDIQLARRIRGER 135
>At1g09200.1 68414.m01027 histone H3 identical to histone H3 from
Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 136
Score = 164 bits (398), Expect = 6e-41
Identities = 79/84 (94%), Positives = 83/84 (98%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
IR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLC
Sbjct: 52 IRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLC 111
Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
AIHAKRVTIMPKDIQLARRIRGER
Sbjct: 112 AIHAKRVTIMPKDIQLARRIRGER 135
>At5g65350.1 68418.m08220 histone H3 nearly identical to histone H3
from Zea mays SP|P05203, Medicago sativa GI:166384,
Encephalartos altensteinii SP|P08903, Pisum sativum
SP|P02300; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 139
Score = 162 bits (393), Expect = 2e-40
Identities = 77/86 (89%), Positives = 84/86 (97%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
IR+YQKSTE+LIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EAYLVGLFEDTNLC
Sbjct: 52 IRKYQKSTEILIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLC 111
Query: 183 AIHAKRVTIMPKDIQLARRIRGERLK 260
AIHAKRVTIMPK+IQLARRIRGER +
Sbjct: 112 AIHAKRVTIMPKEIQLARRIRGERAR 137
>At5g10980.1 68418.m01277 histone H3 identical to HISTONE H3.2,
MINOR, Medicago sativa, SWISSPROT:P11105, histone H3
variant H3.3 Lycopersicon esculentum GI:1435157;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 161 bits (391), Expect = 4e-40
Identities = 79/84 (94%), Positives = 82/84 (97%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
IR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLC
Sbjct: 52 IRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLC 111
Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
AIHAKRVTIMPKDIQLARRIRGER
Sbjct: 112 AIHAKRVTIMPKDIQLARRIRGER 135
>At4g40040.1 68417.m05668 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 161 bits (391), Expect = 4e-40
Identities = 79/84 (94%), Positives = 82/84 (97%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
IR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLC
Sbjct: 52 IRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLC 111
Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
AIHAKRVTIMPKDIQLARRIRGER
Sbjct: 112 AIHAKRVTIMPKDIQLARRIRGER 135
>At4g40030.1 68417.m05667 histone H3.2 identical to Histone H3.2,
minor Lolium temulentum SP|P11105, nearly identical to
histone H3.2 Mus pahari GI:515005; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 161 bits (391), Expect = 4e-40
Identities = 79/84 (94%), Positives = 82/84 (97%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
IR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLC
Sbjct: 52 IRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLC 111
Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
AIHAKRVTIMPKDIQLARRIRGER
Sbjct: 112 AIHAKRVTIMPKDIQLARRIRGER 135
>At1g75600.1 68414.m08784 histone H3.2, putative strong similarity
to histone H3.2 SP|P11105 GI:417103 from Lolium
temulentum, histone H3.2 from Mus pahari GI:515005;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 159 bits (387), Expect = 1e-39
Identities = 77/84 (91%), Positives = 82/84 (97%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
IR+YQKSTELLIRKLPFQRLVREIAQD+KTDLRFQS A+ ALQEA+EAYLVGLFEDTNLC
Sbjct: 52 IRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLC 111
Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
AIHAKRVTIMPKD+QLARRIRGER
Sbjct: 112 AIHAKRVTIMPKDVQLARRIRGER 135
>At1g13370.1 68414.m01554 histone H3, putative strong similarity to
Histone H3.2, minor Medicago sativa SP|P11105, histone
H3 Rubus idaeus GI:10732809; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 136
Score = 155 bits (377), Expect = 2e-38
Identities = 76/84 (90%), Positives = 80/84 (95%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
IR+YQKSTELL RKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLC
Sbjct: 52 IRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLC 111
Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
AIHAKRVTIMPKD+QLARRIR ER
Sbjct: 112 AIHAKRVTIMPKDVQLARRIRAER 135
>At1g19890.1 68414.m02494 histone H3, putative similar to histone H3
from Chlamydomonas reinhardtii GI:571470, Volvox carteri
SP|P08437, histone H3.2 minor from Lolium temulentum
SP|P11105; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 137
Score = 155 bits (375), Expect = 3e-38
Identities = 76/84 (90%), Positives = 80/84 (95%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
IR+YQKST+LLIRKLPFQRLVREIAQDFK DLRFQS A+ ALQEA+EAYLVGLFEDTNLC
Sbjct: 53 IRKYQKSTDLLIRKLPFQRLVREIAQDFKVDLRFQSHAVLALQEAAEAYLVGLFEDTNLC 112
Query: 183 AIHAKRVTIMPKDIQLARRIRGER 254
AIHAKRVTIM KDIQLARRIRGER
Sbjct: 113 AIHAKRVTIMSKDIQLARRIRGER 136
>At5g12910.1 68418.m01481 histone H3, putative similar to histone H3
from Mus musculus GI:51301, Gallus gallus GI:211859,
Medicago sativa GI:166384, Pisum sativum SP|P02300;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 131
Score = 141 bits (341), Expect = 4e-34
Identities = 63/85 (74%), Positives = 79/85 (92%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLC 182
IR+YQK+T+L+IRKLPFQRLV+EIAQ K DLRFQ+ A+ ALQEA+EA++VG+FEDTNLC
Sbjct: 47 IRKYQKTTDLVIRKLPFQRLVKEIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNLC 106
Query: 183 AIHAKRVTIMPKDIQLARRIRGERL 257
A+HAKR TIMPKDIQLA+R+RG+R+
Sbjct: 107 AMHAKRSTIMPKDIQLAKRLRGDRV 131
>At1g01370.1 68414.m00052 centromeric histone H3 HTR12 (HTR12)
similar to histone H3 GB:X17141 GI:10795 from
Tetrahymena pyriformis, GI:161790 from Tetrahymena
thermophila; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 178
Score = 81.8 bits (193), Expect = 4e-16
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Frame = +3
Query: 3 IRRYQKSTELLIRKLPFQRLVREIAQDFKTDL--RFQSAAIGALQEASEAYLVGLFEDTN 176
IR +QK T LLI F R VR I R+ + A+ ALQEA+E YLVGLF D+
Sbjct: 90 IRHFQKQTNLLIPAASFIREVRSITHMLAPPQINRWTAEALVALQEAAEDYLVGLFSDSM 149
Query: 177 LCAIHAKRVTIMPKDIQLARRIRGE 251
LCAIHA+RVT+M KD +LARR+ G+
Sbjct: 150 LCAIHARRVTLMRKDFELARRLGGK 174
>At5g66410.1 68418.m08376 expressed protein
Length = 230
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 36 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 215
+ L F ++ A+D+K ++ A G+ E L L +D L +HA R+ +
Sbjct: 10 LSNLAFGNVLAAAARDYKKEVLANEKAQGSRPVNEEVDLDELMDDPELEKLHADRIAALR 69
Query: 216 KDIQ 227
++++
Sbjct: 70 REVE 73
>At1g18350.1 68414.m02293 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK7) mitogen-activated protein
kinase kinase (MAPKK) family, PMID:12119167
Length = 307
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -2
Query: 251 FTTDSSSKLNILRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLET---QISFEI 81
FT + ++ ILR + V G+FE+ ++ L+E DGG LE+ ++ +
Sbjct: 84 FTRQLAREMEILRRTDSPYVVRCQ--GIFEKPIVGEVSILMEYMDGGNLESLRGAVTEKQ 141
Query: 80 LSDFSHKTLE 51
L+ FS + L+
Sbjct: 142 LAGFSRQILK 151
>At1g01230.1 68414.m00038 ORMDL family protein contains Pfam domain
PF04061: ORMDL family
Length = 157
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 574 LITTARHNLQSHLTQIRHPWAFL 506
L+ + + SH T RHPW FL
Sbjct: 107 LVPVVLYLIASHTTDYRHPWLFL 129
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 161 QANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDKQ 30
Q N C++ G +E SFE+L D S +TL+R +K+
Sbjct: 53 QQNPRVYGCVIGVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKK 96
>At4g04570.1 68417.m00670 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 654
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = -2
Query: 245 TDSSSKLNILRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLETQISFEILSDFS 66
TD S N L G FG + G F E+++ L + S G +E + +L+
Sbjct: 345 TDDFSSENTLGQGG--FG--TVYKGTFPNGQEVAVKRLTKGSGQGDMEFKNEVSLLTRLQ 400
Query: 65 HKTLERQL 42
HK L + L
Sbjct: 401 HKNLVKLL 408
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,954,278
Number of Sequences: 28952
Number of extensions: 237451
Number of successful extensions: 512
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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