Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0626
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 31 0.25
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 29 1.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 27 2.3
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 27 2.3
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 27 4.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 4.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.1
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 26 7.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.4
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 25 9.4
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 9.4
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces... 25 9.4
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 30.7 bits (66), Expect = 0.25
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 215 FALLFSLPASTTSTPGPHQSIPRQLQFRTRTNVQRRV 325
+ +L SL + +TPGP+Q++ R + RTNV V
Sbjct: 730 YLILSSLYQNYINTPGPNQNLARSIYEELRTNVVNNV 766
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/68 (20%), Positives = 28/68 (41%)
Frame = +1
Query: 13 YTAFTSRELLTTLQIPARTFLAFAVTLEEHYIRDNPFHNSLHAADVTQSTNVLLNTPALN 192
Y F + +P +TF + ++ PF +H A+ T ++ + + P L+
Sbjct: 164 YLCFAEYDKRLNCLVPLKTFQFYVTESDQDSTPATPFPMPMHLAEETATSPEISDAPPLS 223
Query: 193 AVFTPLEV 216
PL +
Sbjct: 224 GNVDPLPI 231
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 113 TILSTTLSTLPMSHSLQTY--C*IHLRLMLSSHH*KFALLFSLPASTTSTPGPHQS 274
+ILS+++ST+P+S SL TY I L S + S AS++S+P P S
Sbjct: 648 SILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSS 703
>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 258
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 391 KISHPSFCSSLNATARWWFSRTDSSLYISASSELE 287
++S SFC++ A + ++F+R S Y+SA +E
Sbjct: 19 QLSKSSFCATSRAFSVFYFTRFKRSAYVSAPFGIE 53
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = -3
Query: 581 DSLILEFYQCSCLAIRHRYPRLSSFDHRLQIR----QQTHVFRHI 459
D + ++ ++C+ IRH YP ++ + RL + +T F+HI
Sbjct: 241 DPVYVQHFKCNIGTIRHNYPHINQWLKRLYWKHPAFHETTDFKHI 285
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 26.6 bits (56), Expect = 4.0
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = +3
Query: 294 SELALMYNDESVLENHHLAVAFKLLQNDGCDIFVNLHKKQRQTLRKMVIDMVLSTDMSKH 473
SE L+Y + V N+ +V+ + ++ F+N Q+L K VI L+ ++
Sbjct: 234 SETGLLYQELKVFSNYDPSVSQSIDGDNVSKAFINDQSLALQSL-KSVISKELTNFLALI 292
Query: 474 MSLLADLKTMVERRKSRVAVSYC 542
SL + ++ K V + C
Sbjct: 293 ASLDSQIRADASLEKPMVTIRRC 315
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 127 NSLHAADVTQSTNVLLNTPALNAVFTPLEVCAALFAACVHDVDTRASPINSSS 285
+S+ A+ T ST+ +++TPA N+ L ++ V ++ +P +SSS
Sbjct: 603 SSITASGTTSSTSEIVSTPASNSNTGSLNGTSSFNVNSVGPSSSQTTPTSSSS 655
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +2
Query: 236 PASTTSTPGPHQSIPRQLQ-FRTRTNVQRRVSPREPPPCSRIQAAA 370
P S + P S PR + + P PPP SR+ AAA
Sbjct: 258 PPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAA 303
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 384 DIFVNLHKKQRQTLRKMVIDMVLSTDMSKHMSLLADLKTMV 506
D+F L KK + TLR +D V ++K M++ +D V
Sbjct: 267 DVFQPLAKKYQDTLRFAFLDAVRYGAVAKQMNVESDWPAFV 307
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/60 (21%), Positives = 33/60 (55%)
Frame = -2
Query: 672 AGRTLPSSNATHRLYSGNGLVGLLRSAQCTRFSNT*ILSV*LSSNKTPLPATFFVRPSSS 493
A ++P+S+++ + ++ S+ + S++ ++ SS+ +PL ++ F P+SS
Sbjct: 18 ASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASS 77
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 533 VLLLDNYTDRIQVLENLVHCA-DLSNPT 613
+LL+D+YT ++ +EN+ + DL N T
Sbjct: 283 ILLIDSYTPHLRAVENIRNSGNDLRNTT 310
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 236 PASTTSTPGPHQSIPR 283
P+ST STP P +S+P+
Sbjct: 417 PSSTPSTPSPAESLPQ 432
>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 386 YFRESSQETKTDPQENG 436
YF+ S E TDP ENG
Sbjct: 152 YFQSSGWEIDTDPYENG 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,713
Number of Sequences: 5004
Number of extensions: 70030
Number of successful extensions: 240
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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