Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0626
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0121 - 948450-948904,949073-949224,949389-949449,950201-95... 32 0.45
05_07_0035 - 27221338-27221433,27221510-27221599,27222056-272221... 31 0.79
10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,160... 29 3.2
02_04_0525 - 23672984-23673085,23673315-23673419,23673820-236739... 29 3.2
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 29 4.2
04_04_0448 - 25314042-25314183,25314271-25314321,25314437-253150... 29 5.6
11_04_0402 - 17257110-17258477,17258488-17258490 28 7.4
10_01_0256 - 2688172-2688786,2690779-2690857,2691567-2691652,269... 28 7.4
09_04_0016 + 13800489-13800629,13801050-13801231,13801493-138015... 28 7.4
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 28 7.4
11_06_0004 - 19166144-19166608 28 9.7
10_08_0042 - 14383143-14383628,14383647-14384609,14384697-143864... 28 9.7
10_01_0131 - 1541964-1542161,1542235-1542390,1543046-1543923,154... 28 9.7
09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366... 28 9.7
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312... 28 9.7
06_03_1358 - 29548440-29549315 28 9.7
03_05_0737 + 27258320-27259007,27259263-27259435,27262684-272627... 28 9.7
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 28 9.7
>11_01_0121 -
948450-948904,949073-949224,949389-949449,950201-950336,
951042-951376,952523-952577
Length = 397
Score = 32.3 bits (70), Expect = 0.45
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 464 VETHESAGGSE-DDGRTKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNP 610
VET E GS DG + V GSG L +Y +++ N VHC L NP
Sbjct: 339 VETLEPLQGSGGSDGAVQSVLGSG---LPSYRVNRRLMTNRVHCRALPNP 385
>05_07_0035 -
27221338-27221433,27221510-27221599,27222056-27222115,
27222231-27222523,27222601-27222757,27222917-27223261,
27223890-27224020,27224119-27224596,27224817-27225563
Length = 798
Score = 31.5 bits (68), Expect = 0.79
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Frame = +2
Query: 131 LSTLPMSHSLQTYC*IHLRL----MLSSHH*KFALLFSLPASTTSTPGPHQSIPRQLQFR 298
LS LP+ HS + HLRL +LSS H + + AS++S+ G +++ P R
Sbjct: 3 LSELPLHHSFRLSSRPHLRLLPLRLLSSRHASSSSSTTAAASSSSSSGGNRAPPAPNPTR 62
Query: 299 TRTNVQR--RVSPREPPP 346
+Q+ P PPP
Sbjct: 63 GAPWLQKWGPTDPAAPPP 80
>10_01_0132 -
1601421-1601657,1601761-1601922,1602812-1603721,
1604587-1604651,1604704-1604746,1605086-1605128,
1605874-1605955,1606270-1606464,1606567-1606721,
1611207-1611435,1611538-1611693,1612539-1613476,
1614946-1614967
Length = 1078
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 155 CVTSAAWRELWKGLSRI 105
CV S WR+LW+ L+RI
Sbjct: 705 CVLSRRWRDLWRSLTRI 721
>02_04_0525 -
23672984-23673085,23673315-23673419,23673820-23673979,
23674085-23674162,23674383-23674524,23674641-23674785,
23674888-23674950,23675042-23675101,23675364-23675441,
23675524-23675598,23675744-23675860,23675960-23676190,
23676300-23676419,23676512-23676588,23676669-23676769,
23676844-23676950,23677094-23677251,23677383-23677599
Length = 711
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 488 GSEDDGRTKKVAGSGVLLLDNYTDRIQV 571
G +DGR K G G LL+D D I+V
Sbjct: 319 GEGEDGRMKSAIGIGTLLMDGLGDTIRV 346
>06_03_1283 -
28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 721 HTLD*YPCHVHVHDRLCWKNSSIQ*CH 641
HT D +PCH H HD L + ++ CH
Sbjct: 916 HTADLHPCHDHDHDNL--EVEEVKDCH 940
>04_04_0448 -
25314042-25314183,25314271-25314321,25314437-25315033,
25315151-25315353
Length = 330
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 543 SNKTPLPATFFVRPSSSDPPADSCVSTYLSRGPCR 439
S +TPL F+RP+S +P S VS S G CR
Sbjct: 16 SLRTPLSPLLFLRPASCNP---SAVSGSCSSGACR 47
>11_04_0402 - 17257110-17258477,17258488-17258490
Length = 456
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 646 ITGWKSSSSKGDREREHG---MDISPMCDRHNATIRKISSRFID 768
+ G SS++ G+R R HG + + RHNAT+ ++S+ D
Sbjct: 159 LDGNGSSAAGGERRRSHGCGHIKAAMYFSRHNATLTRLSAMSSD 202
>10_01_0256 -
2688172-2688786,2690779-2690857,2691567-2691652,
2693046-2693113,2695175-2695244,2696191-2696320,
2696924-2697906
Length = 676
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 512 KKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVAL-LDGRVLPAKAIVN 688
KKV GS + + D++ L+ ++ +P PL +YK V + + G +P + V
Sbjct: 508 KKVIGSKTCIDEEDIDQLPYLQAVIKETHRLHPAIPLLMYKAAVPVEIQGYKIPKETTVI 567
Query: 689 VN 694
VN
Sbjct: 568 VN 569
>09_04_0016 +
13800489-13800629,13801050-13801231,13801493-13801596,
13801914-13801927
Length = 146
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 399 LHKKQRQTLRKMVIDMVLSTDM-SKHMSLLADLKTMVERRKSRVAVSYC 542
L ++ +Q R +++ + D + SLL D+K M+E R R A C
Sbjct: 62 LDERTKQAERNLLLSLDKFCDACERRASLLRDIKAMLEARNKRSAQKLC 110
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +2
Query: 395 ESSQETKTDPQENGYRHGPLDRYVETHESAGGSEDDGRTKKVAGSGVLLLDNYTDRIQVL 574
+SS ET D Q+ P D ++ S G + KKV GS L N + IQV+
Sbjct: 730 KSSGETSADKQDGDTSCSPSDG--NSNNSRGSVKLASGDKKVMGSLKNLGQNMLENIQVI 787
Query: 575 EN 580
E+
Sbjct: 788 ES 789
>11_06_0004 - 19166144-19166608
Length = 154
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2
Query: 398 SSQETKTDPQENGYRHGPLDRYVETHESAGGSEDDGRTKKVAGSGVLLLDNYTDRIQVLE 577
++++ DP RH P R E + EDDGR + VAG+GV L+ + L
Sbjct: 91 AAEQVADDPSRFQQRHVP-GRVDEVVQ-----EDDGRHRVVAGAGVHPLERHQVEEHALR 144
Query: 578 NLVH 589
+ H
Sbjct: 145 GIHH 148
>10_08_0042 -
14383143-14383628,14383647-14384609,14384697-14386443,
14387901-14388010,14388767-14389003
Length = 1180
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 230 SLPASTT---STPGPHQSIPRQLQFRTRTNVQRRVSPREPPPCSRIQAAAE 373
S P+S T S+PG S P + R + RV PR PPPC +AA +
Sbjct: 149 SPPSSRTAGVSSPGLSPSRPSK-----RRIGRARVQPRAPPPCDERRAAED 194
>10_01_0131 -
1541964-1542161,1542235-1542390,1543046-1543923,
1544060-1544135,1544162-1544191
Length = 445
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 155 CVTSAAWRELWKGLSRI 105
CV S WR LW+ L RI
Sbjct: 90 CVLSRRWRHLWRSLPRI 106
>09_02_0053 -
3665202-3665900,3666109-3666359,3666612-3666938,
3667017-3667242,3667328-3667846,3668789-3668863,
3668963-3669052,3669142-3669222,3672176-3672222,
3672620-3672685,3673834-3673930,3673983-3674046,
3674160-3674278,3674448-3674563,3676675-3676708
Length = 936
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 557 DRIQVLENLVHCADLSNPTKPLPLYKRWVALLDGRVLPAKAIVNV 691
D IQ+ H +SNP + P ++ + LDG +PA N+
Sbjct: 411 DMIQIRSIETHSKIVSNPGRFYPYFEDCIGALDGTHIPAFVPENI 455
>08_02_0911 +
22530370-22530497,22531083-22531126,22531224-22531267,
22531428-22531946,22532032-22532257,22532336-22532662,
22532915-22533165,22533374-22534072
Length = 745
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 557 DRIQVLENLVHCADLSNPTKPLPLYKRWVALLDGRVLPAKAIVNV 691
D IQ+ H +SNP + P ++ + LDG +PA N+
Sbjct: 220 DMIQIRSIETHSKIVSNPGRFYPYFEDCIGALDGTHIPAFVPENI 264
>06_03_1358 - 29548440-29549315
Length = 291
Score = 27.9 bits (59), Expect = 9.7
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
Frame = +2
Query: 197 SSHH*KFALLFSLPASTTSTPGPHQSIPRQLQFRT-RTNVQRRVSPREPPPCSRIQAAAE 373
SS +F L SLPA+ P P +S+ R T+ +P PP AA E
Sbjct: 47 SSLESRFRKLKSLPAAPLPPPPPAKSLGRSATAPPHHTDPPPSETPDPAPPAPPAPAAQE 106
Query: 374 *WM*YFRESSQETKTDPQENGYRHGPLDRYVETHESAGGSEDD 502
+ +QE + H P V T +A +E+D
Sbjct: 107 RRPEDAAKEAQEKENSSPPPSQAHPPPAVTVPTAAAADDNEED 149
>03_05_0737 +
27258320-27259007,27259263-27259435,27262684-27262758,
27262832-27263296
Length = 466
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 154 QSTNVLLNTPALNAVFTPLE-VCAALFAACVHDVDTRASPINSSSTPVP 297
+ VL + PA+ A+ LE + A L AA ++ +R +P +S++ P P
Sbjct: 62 EQEGVLRSKPAVVALIDELERMRAPLAAALAEELSSRPAPSSSAAPPPP 110
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 233 LPASTTSTP--GPHQSIPRQLQFRTRTNVQRRVSPREPPPCSRIQAAAE 373
LP+S+ S P G H+ +P L+ Q SP PP + AA E
Sbjct: 25 LPSSSASFPRAGHHRRLPLPLRALASEGPQPAPSPAPDPPPPELPAAPE 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,300,887
Number of Sequences: 37544
Number of extensions: 503174
Number of successful extensions: 1749
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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