Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0626
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   4.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.9  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 144 GSVERVVERIVSNIVLL*GNC 82
           G V R+  RI  N VLL G C
Sbjct: 31  GCVSRISNRISRNRVLLRGQC 51


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 221 LLFSLPASTTSTPGPHQSIPRQ 286
           LLF L  +T S    HQS+ RQ
Sbjct: 316 LLFGLANNTLSCWNEHQSLDRQ 337


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 668 PAKAIVNVNMAWISVQCVTDIMLLL 742
           P + IV V++ W+   C++   LL+
Sbjct: 155 PRRMIVYVSLVWLGAACISLPPLLI 179


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query: 139 AADVTQSTNVLLNTPALNAVFTPLEVCAALFAAC-VHDVDTRASPINSSST 288
           AAD T    VL +   ++  +TP+  C     AC   D+  +    N  +T
Sbjct: 337 AADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTT 387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,661
Number of Sequences: 438
Number of extensions: 4773
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)