Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0626
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    32   0.38 
At4g38560.1 68417.m05459 expressed protein                             31   1.2  
At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein ...    30   2.0  
At2g06030.1 68415.m00660 expressed protein                             29   4.6  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    29   4.6  
At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family...    28   6.1  
At4g34290.1 68417.m04874 SWIB complex BAF60b domain-containing p...    28   6.1  
At1g43720.1 68414.m05023 hypothetical protein                          28   6.1  
At5g53060.1 68418.m06592 KH domain-containing protein                  28   8.1  

>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
 Frame = +1

Query: 76   AFAVTLEEHYIRDNPFHNSLHAADVTQSTN-------VLLNTPALNAVFTPLEVCAALFA 234
            A A+  E+HY    PF  + H   +   TN       +LL   AL  V   +E C  +  
Sbjct: 1071 AMAIVYEQHYNTIGPFEGTAHITALIDRTNDRALRHRLLLLLKALVKVLLNVEGCVVV-G 1129

Query: 235  ACVHDVD-TRASPINSSSTPVP 297
             CV  VD       NS  TP+P
Sbjct: 1130 GCVLAVDLLTVVHENSERTPIP 1151


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
 Frame = +2

Query: 71  SWRSQLP*-RSTIFETILSTTLSTLPMSHSLQTYC*IHLRLMLSSHH*KFA-LLFSLPAS 244
           S+ + LP  RST+     +  ++ LPMS S   YC          H    A +L  +P+ 
Sbjct: 90  SFNANLPTPRSTLHGNETAPGINWLPMSPSFAVYCKKDCFSSRIDHREGEAPILDEMPSK 149

Query: 245 T-TSTPGPHQSIPRQLQFRTRTNVQRRVSPREP------PPCSRI 358
           T   TP    + PR+ + RTR    R  +P EP      PP SRI
Sbjct: 150 TRLKTPLSPDTRPRKSEHRTRNQGPRSKTP-EPRGSYLEPPRSRI 193


>At5g03150.1 68418.m00263 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 503

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 239 ASTTSTPGPHQSIPRQLQFRTR---TNVQRRVSPREPPPCSRIQAAA 370
           +S T++P P  S P  +Q +     TNV R    R PPP S +  ++
Sbjct: 403 SSATASPPPRSSSPMMIQQQLNNFNTNVLRENHNRAPPPLSGVSTSS 449


>At2g06030.1 68415.m00660 expressed protein 
          Length = 243

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +2

Query: 476 ESAGGSEDD---GRTKKVAGSGVLLLDNYTDRIQVLENLVHCADLSN 607
           E+AGGS  +      KKV  +  L L  ++D++Q+L+ +  C ++SN
Sbjct: 144 ETAGGSLKELSLNNVKKVGHNTALALAKHSDKLQILD-ISWCREMSN 189


>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
            similar to BEIGE (GI:3928547) [Rattus norvegicus];
            Similar to gb|U70015 lysosomal trafficking regulator from
            Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
            repeats. ESTs gb|T43386 and gb|AA395236 come from this
            gene
          Length = 3601

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 351  VAFKLLQNDGCDIFVNLHKKQRQTLRKMVIDMVL 452
            VA ++   DGC+  +  HKK+R+ + K ++ M L
Sbjct: 2898 VAIEIFSMDGCNDLLVFHKKEREEVFKNLVAMNL 2931


>At5g34581.1 68418.m04037 hydroxyproline-rich glycoprotein family
           protein
          Length = 161

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
 Frame = +2

Query: 263 PHQSIPRQLQFRTRTNVQRRVSPREPPPCSRIQ---AAAE*WM*YFRESSQETKTDPQEN 433
           PH+S P+ +Q  T      +   ++PP   R Q    A +  + Y +E   +   DP E 
Sbjct: 37  PHKSPPQTIQTPTPARSHSQSGSQQPPLIRRKQQQPLACQHQIPYLQEQPSQ---DPPET 93

Query: 434 GYRHGPLDRYVETHESAGGSEDDGRTKKVAGSGV 535
            +   P  +    HE   G ED    K+  G  V
Sbjct: 94  QFI--PNHQNPNNHEEEDGEEDGDEFKEEDGEEV 125


>At4g34290.1 68417.m04874 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 144

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 194 ALSAGVFNSTFVDCVTSAAWRELWKGLSRI*CSSKVTANAKKVRA 60
           ALS+G+F++TF+ CV +A  R      S +  S     N + VRA
Sbjct: 2   ALSSGIFSTTFL-CVDTAPLRSSMLSPSSLRLSPNHPTNLRMVRA 45


>At1g43720.1 68414.m05023 hypothetical protein 
          Length = 314

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 400 FTRNKDRPSGKWLSTWSSRQICRN 471
           F RN       W+ +W SR++C N
Sbjct: 291 FKRNDSNKCSIWIFSWKSRRLCNN 314


>At5g53060.1 68418.m06592 KH domain-containing protein 
          Length = 652

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 176 IHLRLMLSSHH*KFALLFSLPASTTSTPGPHQSIPRQLQFRTRTN-VQRRVSP 331
           + L L+L SH  K       P ++TST GP + +   ++  +  N +Q R  P
Sbjct: 474 VELTLLLRSHMFKELSQKETPPASTSTTGPLEGVAGVMEVASSNNTIQSREGP 526


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,433,421
Number of Sequences: 28952
Number of extensions: 377611
Number of successful extensions: 1241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)