Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0625
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   0.96 
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   2.2  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    25   6.7  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    24   8.9  

>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 8    TRALHEQTRTLKRSNAPRLLFFYSVP 85
            TRA+ EQ +TLK++    +LF + +P
Sbjct: 1098 TRAIQEQAKTLKKAGMDFMLFSFWLP 1123


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 11  RALHEQTRTLKRSNAPRLLFFYSVPVTERETSP 109
           R  +   R  +RSN+P      S+PV +R++SP
Sbjct: 255 RERYSYHRRRERSNSPSYTKNESIPVVDRDSSP 287


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
 Frame = +3

Query: 225 HAEP--GRQLAGSN----PLGSPLGFAPPPDDRTKKS 317
           H  P  G  +AGS     P   PLG  PPP D    S
Sbjct: 189 HVRPAVGATMAGSAMRTFPSNLPLGHPPPPSDSANSS 225


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 11  RALHEQTRTLKR-SNAPRLLFFY 76
           RA+HE+ RT+K  SN  R + +Y
Sbjct: 76  RAVHEEVRTMKLVSNQKRCVSYY 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,996
Number of Sequences: 5004
Number of extensions: 22142
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)