Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0625
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0426 + 3364341-3364713,3364823-3364963,3365389-3365510,336... 30 0.71
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450... 29 1.6
03_01_0601 + 4423831-4424115,4424278-4424406,4424615-4424779,442... 29 2.2
08_02_1633 + 28392378-28393445 28 2.9
08_02_0645 - 19666189-19666209,19666330-19666437,19667041-196671... 28 2.9
01_06_0983 - 33583784-33583994,33584060-33584919 28 2.9
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 27 5.0
04_04_0001 + 22067918-22068114,22068232-22068247,22068280-220683... 27 5.0
02_05_1000 + 33417357-33417600,33417692-33417744,33418376-334184... 27 6.6
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 27 8.7
10_08_0785 - 20536265-20537032 27 8.7
03_06_0209 - 32377045-32378008,32378086-32378210,32378772-323788... 27 8.7
03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648 27 8.7
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 27 8.7
>05_01_0426 +
3364341-3364713,3364823-3364963,3365389-3365510,
3365939-3366202,3366289-3366419,3366819-3367026,
3367121-3367186,3367276-3367353,3368038-3368079
Length = 474
Score = 30.3 bits (65), Expect = 0.71
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 260 PAGEPARVRASSGRPDQEVAEHD 328
P PAR S +PD ++AEHD
Sbjct: 15 PKSSPARSTRSKSKPDSDIAEHD 37
>09_02_0121 +
4502628-4502696,4503727-4503829,4504205-4504328,
4505963-4506306,4506383-4506487,4507907-4508288,
4509173-4509437,4509936-4510094,4511150-4511201,
4511266-4511462,4512865-4513350,4513797-4514093
Length = 860
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 301 SSGGGANPSGLPSGLLPASCRPGSACSA 218
+S G + SGL S ++P+ RP S+CS+
Sbjct: 211 ASQGTSRSSGLSSTVVPSGSRPSSSCSS 238
>03_01_0601 +
4423831-4424115,4424278-4424406,4424615-4424779,
4424925-4425230,4425387-4425448,4425776-4426145,
4426427-4426555,4427233-4427397,4427534-4427839,
4427928-4428068
Length = 685
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 313 FLVRSSGGGANPSGLPSGLLPAS 245
F +RS+GGG + +GLLPAS
Sbjct: 30 FALRSAGGGGGGGDVEAGLLPAS 52
>08_02_1633 + 28392378-28393445
Length = 355
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 346 HPPSTSPRSFDDKGSRLKLCERR 414
HPP T+PRS+D L L +RR
Sbjct: 284 HPPHTTPRSWDAHVHDLSLLQRR 306
>08_02_0645 -
19666189-19666209,19666330-19666437,19667041-19667152,
19667321-19667417,19667809-19667911,19668071-19668152,
19668519-19668665,19668763-19668863,19669037-19669231
Length = 321
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 367 SATCSEDGTGTHSVMFCDFLVRSS-GGGANPSGLPSGLLPASCRPGSACSAPE 212
SA G G H ++ C R + G A+ G+P L AS P +AP+
Sbjct: 9 SAVALCGGRGGHRLLSCAAARRRAPGASASAKGIPRSALRASVTPEFVTAAPD 61
>01_06_0983 - 33583784-33583994,33584060-33584919
Length = 356
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 249 AGSNPLGSPLGFAPPPDDRTKKSQNMTECVPVPSS 353
AG++P+ +P + P D+ S N+ C P PSS
Sbjct: 79 AGADPVATPDISSCGPPDQLPPSANVLTCCPPPSS 113
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +3
Query: 207 AGSGAEHAEPGRQLAGSNPLGSPLGFAPPPD 299
A SG EH GRQLA + G+P G AP PD
Sbjct: 576 AMSGEEH---GRQLALALFDGNPAGSAPAPD 603
>04_04_0001 +
22067918-22068114,22068232-22068247,22068280-22068375,
22068827-22068922,22069174-22069236
Length = 155
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 379 RQTISATCSEDGTGTHSVMFCDFLVRSSGGGANPSGLPSGLLP 251
R+T + + + D + +H V C S G G NP PS ++P
Sbjct: 108 RRTGATSANADSSRSHCVFTCVSKSESKGSGTNP---PSRIIP 147
>02_05_1000 +
33417357-33417600,33417692-33417744,33418376-33418413,
33418720-33419114,33420092-33420221,33420512-33421343
Length = 563
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 346 GTGTHSVMFCDFLVR-SSGGGANPSGLPSGLLPASCRPGSA 227
G G H ++ DFL + S GGA +PS L C GSA
Sbjct: 492 GYGLHDELY-DFLFKCESIGGAQGGIIPSSLPELQCPDGSA 531
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 373 TISATCSEDGT-GTHSVMFCDFLVRSSGGGANPSGLPSGLLPASCR 239
T S T SE+G G S C F RS GG PS + LP R
Sbjct: 251 TTSETRSEEGEMGNRSE--CGFAARSEYGGTAPSEYAAAPLPLPLR 294
>10_08_0785 - 20536265-20537032
Length = 255
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 310 LVRSSGGGANPSGLPSGLLPASCRPGSACS 221
L++S GGG+NP+ +P G+ PA G S
Sbjct: 11 LLQSVGGGSNPNRIP-GIPPADPPSGGVSS 39
>03_06_0209 - 32377045-32378008,32378086-32378210,32378772-32378816,
32379009-32379295,32379778-32381509,32381631-32381971,
32383753-32383876,32384484-32384722,32385156-32385534
Length = 1411
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 385 PCRQTISATCSEDGTGTHSVMFCDFLVRSSGGGANPSGLPSGLLPASCRPGSACSAP 215
P SAT +D ++ C F +S A P LPS +S +P +A AP
Sbjct: 1083 PMSAAQSATEDDDEVARAAMPLCSFYASTSLPVAKPHSLPSS---SSSKPYTATPAP 1136
>03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648
Length = 587
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -1
Query: 391 LXPCRQTISATCSEDGTGTHSVMFCDFLVRSSG-GGANPSGLPSG 260
L P + TCS+ +G +V+F F G G P +P G
Sbjct: 135 LHPAECGVGETCSKATSGQFAVLFMSFAFLVLGSAGIRPCSMPFG 179
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 213 SGAEHAEPGRQLAGSNPLGSPLGFAPPPDDRTKKSQNMTECVPVPSSEHVAEI 371
+G ++ G Q+ G NP+G D T++ +TEC + SE + +
Sbjct: 532 AGGCGSQLGEQIVGKNPIGK----GEDNDPLTERVSEVTECTLLAPSEKLRSV 580
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,613,774
Number of Sequences: 37544
Number of extensions: 196096
Number of successful extensions: 862
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -