Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0625
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16824| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   9e-08
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_3456| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.9  
SB_52505| Best HMM Match : DUF963 (HMM E-Value=0.81)                   27   6.8  
SB_50792| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  

>SB_16824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 53.2 bits (122), Expect = 9e-08
 Identities = 25/29 (86%), Positives = 26/29 (89%)
 Frame = +3

Query: 297 DDRTKKSQNMTECVPVPSSEHVAEIV*RQ 383
           D R+KKS NMTECVPVPSSEHVAEIV RQ
Sbjct: 36  DLRSKKSMNMTECVPVPSSEHVAEIVGRQ 64



 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 190 DQRAFKLALELSMLSL 237
           DQRA ++ALELSML L
Sbjct: 9   DQRALQIALELSMLGL 24


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 254  QQPAGEPARVRASSGRPDQEVAEHDGV 334
            QQPA +P+   A+   P Q V E  GV
Sbjct: 2169 QQPASQPSEATAAVSAPSQRVKESSGV 2195


>SB_3456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 21/66 (31%), Positives = 25/66 (37%)
 Frame = -1

Query: 409 ARKALILXPCRQTISATCSEDGTGTHSVMFCDFLVRSSGGGANPSGLPSGLLPASCRPGS 230
           ARK      C+     TC+E+  G H    C   V   G        PS   P+ CR G 
Sbjct: 77  ARKECDPDTCKN--GGTCTEEAQGRH---LCTCAVGFRGDNCEE---PSKCHPSPCRNGG 128

Query: 229 ACSAPE 212
            CS  E
Sbjct: 129 ECSETE 134


>SB_52505| Best HMM Match : DUF963 (HMM E-Value=0.81)
          Length = 388

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 122 ILSIKERFPSRSLVLNKKIIDGVRSIVLRCAF 27
           I+S + R    S++L K+  DG+RS ++ C F
Sbjct: 239 IISCRVRVCWNSVILVKREFDGIRSSLVACEF 270


>SB_50792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 122 ILSIKERFPSRSLVLNKKIIDGVRSIVLRCAF 27
           I+S + R    S++L K+  DG+RS ++ C F
Sbjct: 7   IISCRVRVCWNSVILVKREFDGIRSSLVACEF 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,573,647
Number of Sequences: 59808
Number of extensions: 193301
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)