SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0625
         (439 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    23   4.8  
AY330174-1|AAQ16280.1|  178|Anopheles gambiae odorant-binding pr...    23   4.8  
AJ618918-1|CAF01997.1|  228|Anopheles gambiae putative odorant-b...    23   4.8  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   6.3  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   6.3  
AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    23   6.3  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    22   8.3  

>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 243 QLAGSNPLGSPLGFAP 290
           +L G++PL SPL  AP
Sbjct: 186 ELVGTDPLSSPLQAAP 201


>AY330174-1|AAQ16280.1|  178|Anopheles gambiae odorant-binding
           protein AgamOBP47 protein.
          Length = 178

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -2

Query: 315 TSWSGRPEEARTRAGSPAGCC 253
           + W G+ +      G P GCC
Sbjct: 40  SKWIGQTKRQMAMEGIPRGCC 60


>AJ618918-1|CAF01997.1|  228|Anopheles gambiae putative
           odorant-binding protein OBPjj2 protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = -2

Query: 315 TSWSGRPEEARTRAGSPAGCC 253
           + W G+ +      G P GCC
Sbjct: 90  SKWIGQTKRQMAMEGIPRGCC 110


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 9   HAPYMNKRAP*NDRTHPVYYFFIQY 83
           H P+M +R+   DR   V+Y   Q+
Sbjct: 561 HWPFMTERSELKDRLPSVWYLVRQF 585


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 9   HAPYMNKRAP*NDRTHPVYYFFIQY 83
           H P+M +R+   DR   V+Y   Q+
Sbjct: 562 HWPFMTERSELKDRLPSVWYLVRQF 586


>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 292 GGANPSGLPSGLLPASCRPGSA 227
           GG  P G+PS   P    P S+
Sbjct: 86  GGLPPKGVPSSASPVYMSPASS 107


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 346  HPPSTSPRSF 375
            HPP T+P SF
Sbjct: 1206 HPPGTAPNSF 1215


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,148
Number of Sequences: 2352
Number of extensions: 5772
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36568146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -