Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0625
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.        73   1e-13
AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess...    73   1e-13
AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess...    73   1e-13
Z75711-10|CAK55176.1|  400|Caenorhabditis elegans Hypothetical p...    29   1.1  
Z75711-9|CAK55175.1|  331|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n...    29   1.1  
DQ185512-1|ABA28304.1|  400|Caenorhabditis elegans AXL-1 protein.      29   1.1  
U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    28   3.4  
Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.
          Length = 415

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 40/64 (62%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
 Frame = +3

Query: 249 AGSNPLGSPLGFAPPPDDRTKKS-QNMTECVPVPSSEHVAEIV*RQGXKIKALRAKTNTY 425
           A  +P+  P   A   + RT    QN+TE V VP+SEHVAEIV RQG KIKALRAKTNTY
Sbjct: 21  ASCSPVSDPEDIAQFLNYRTSIGVQNVTESVEVPTSEHVAEIVGRQGCKIKALRAKTNTY 80

Query: 426 IKTP 437
           IKTP
Sbjct: 81  IKTP 84


>AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess
           protein 3, isoform a protein.
          Length = 415

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 40/64 (62%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
 Frame = +3

Query: 249 AGSNPLGSPLGFAPPPDDRTKKS-QNMTECVPVPSSEHVAEIV*RQGXKIKALRAKTNTY 425
           A  +P+  P   A   + RT    QN+TE V VP+SEHVAEIV RQG KIKALRAKTNTY
Sbjct: 21  ASCSPVSDPEDIAQFLNYRTSIGVQNVTESVEVPTSEHVAEIVGRQGCKIKALRAKTNTY 80

Query: 426 IKTP 437
           IKTP
Sbjct: 81  IKTP 84


>AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess
           protein 3, isoform b protein.
          Length = 443

 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 40/64 (62%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
 Frame = +3

Query: 249 AGSNPLGSPLGFAPPPDDRTKKS-QNMTECVPVPSSEHVAEIV*RQGXKIKALRAKTNTY 425
           A  +P+  P   A   + RT    QN+TE V VP+SEHVAEIV RQG KIKALRAKTNTY
Sbjct: 52  ASCSPVSDPEDIAQFLNYRTSIGVQNVTESVEVPTSEHVAEIVGRQGCKIKALRAKTNTY 111

Query: 426 IKTP 437
           IKTP
Sbjct: 112 IKTP 115


>Z75711-10|CAK55176.1|  400|Caenorhabditis elegans Hypothetical
           protein K02B12.4b protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 222 EHAEPGRQLAGSNPLGSPLGFAPPP 296
           EHAE  R+   S P G+  GFAPPP
Sbjct: 200 EHAESPRKEKSSTPYGTD-GFAPPP 223


>Z75711-9|CAK55175.1|  331|Caenorhabditis elegans Hypothetical
           protein K02B12.4a protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 222 EHAEPGRQLAGSNPLGSPLGFAPPP 296
           EHAE  R+   S P G+  GFAPPP
Sbjct: 131 EHAESPRKEKSSTPYGTD-GFAPPP 154


>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 62
           protein.
          Length = 1256

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +3

Query: 288 PPPDDRTKKSQN--MTECVPVPSSEHVAE 368
           PPP++   + QN  MTE +P  S+EHV++
Sbjct: 613 PPPENSQLQFQNFGMTETIPQQSNEHVSQ 641


>DQ185512-1|ABA28304.1|  400|Caenorhabditis elegans AXL-1 protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 222 EHAEPGRQLAGSNPLGSPLGFAPPP 296
           EHAE  R+   S P G+  GFAPPP
Sbjct: 200 EHAESPRKEKSSTPYGTD-GFAPPP 223


>U41991-9|AAA83349.1|  297|Caenorhabditis elegans Hypothetical
           protein C42D4.11 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 131 WEAILSIKERFPSRSLVLNKKIIDGVRSI 45
           W+   S+ ER+PS+  +  +  IDGVR +
Sbjct: 180 WKTAYSLVERYPSQPKITERIWIDGVRKV 208


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
           constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 352 PSTSPRSFDDKGSRLKLCERRLTLTSR 432
           P T+P ++D+K    K C+ R  L SR
Sbjct: 457 PRTNPEAYDEKSPLFKSCKLRFYLCSR 483


>Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical
           protein F31B9.4 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/49 (36%), Positives = 20/49 (40%)
 Frame = -1

Query: 382 CRQTISATCSEDGTGTHSVMFCDFLVRSSGGGANPSGLPSGLLPASCRP 236
           C QTIS  C     GT+  +       SSGG    SGLP       C P
Sbjct: 102 CNQTISIQCQASADGTYREVRV-VGNYSSGGATLASGLPITGAVIMCNP 149


>Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical
           protein T25B9.4 protein.
          Length = 546

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 297 DDRTKKSQNMTECVPVPSSEHVA 365
           D  TKK +N T C+P P +  VA
Sbjct: 420 DSSTKKMRNDTVCIPPPETATVA 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,388,982
Number of Sequences: 27780
Number of extensions: 145208
Number of successful extensions: 498
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)