Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0624
         (560 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   5.5  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   7.2  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   7.2  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.6  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +3

Query: 84  HDSFP*RTEGGRPHCGRRRPSHLSGNGWRSITGCG 188
           ++S+P  T  G  H G  +   ++ N W  +   G
Sbjct: 162 YESWPFNTMSGATHHGGIKSDSVTSNAWWDVHSTG 196


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 167 PTITGQMGWSSPAT 126
           P I G M W+ P+T
Sbjct: 433 PPIGGMMNWNMPST 446


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 212 RSNIPEAKSTASDASPTITGQMGWSSPATVRPAA 111
           +S   EA +  S +SP+ +     SS A+  PAA
Sbjct: 25  QSATTEAPAAYSSSSPSGSSPQHSSSSASTSPAA 58


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 212 RSNIPEAKSTASDASPTITGQMGWSSPATVRPAA 111
           +S   EA +  S +SP+ +     SS A+  PAA
Sbjct: 25  QSATTEAPAAYSSSSPSGSSPQHSSSSASTSPAA 58


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 395 NVFRAIKKKRCACNL 439
           N++R IKK+  +C+L
Sbjct: 160 NMYRTIKKRLRSCDL 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,249
Number of Sequences: 336
Number of extensions: 2418
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)