Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0624
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    45   7e-06
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    44   2e-05
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    26   3.3  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   4.4  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    25   5.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.6  

>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 45.2 bits (102), Expect = 7e-06
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = +1

Query: 1   PPPVVAASLKSLDLVERSGELRQRLRQNTTAFREGLKAAGLTVAGDDHPICPVMVGEASL 180
           PP V+  +L +++ ++ S   R++ R      ++ L   G+ V  +D  I P MVG+A L
Sbjct: 410 PPHVMVGALTAVEHLKVSNVEREQQRSAVRRVKQSLSEIGIPVLSNDTHIVPAMVGDAHL 469

Query: 181 AVDLASGML--ERGVYVVAFSYPVV 249
           A  LAS  L  +  +YV + ++P V
Sbjct: 470 A-KLASDSLLHDHNIYVQSINFPTV 493


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
 Frame = +1

Query: 7   PVVAASLKS--LDLVERSG-----ELRQRLRQNTTAFREGLKAAGLTVAG-DDHPICPVM 162
           P V A +KS  L++++ S      E  +RL  N+   R GLK  G  + G DD P+ P++
Sbjct: 432 PAVLAQIKSSFLEIMDNSPTSAGLERIERLAFNSRYIRLGLKRLGFIIFGNDDSPVVPLL 491

Query: 163 VGEASLAVDLASGMLERGVYVVAFSYPVVP 252
           +         +  ML+RG+ VV   YP  P
Sbjct: 492 LYNPGKINAFSHEMLKRGIAVVVVGYPACP 521


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 155 GQMGWSSPATVRPAAFSPSRKAVVF 81
           G +GWS P+    A  +P R  VVF
Sbjct: 423 GHIGWSVPSAFGYAIGAPKRNVVVF 447


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 155 GQMGWSSPATVRPAAFSPSRKAVV 84
           G +GWS P+ +  A  +P R+ +V
Sbjct: 419 GHIGWSVPSAMGYAVAAPERRTIV 442


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 416 KKRCACNLVHVNEVKLLFRCVV 481
           +K C+ N V+ NEV LLF  V+
Sbjct: 92  RKTCSSNKVYSNEVPLLFVFVI 113


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 215 PRSNIPEAKSTASDASPTITGQMGWSSPATVRPAAFSPSRK 93
           P  +  EAKST +D+SP        + P     A  +PS K
Sbjct: 463 PAKSSEEAKSTTNDSSPPKDSSSTSTQPTEQSNAQQAPSPK 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,047
Number of Sequences: 5004
Number of extensions: 38550
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)