Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0624
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0051 - 40759529-40759624,40759728-40759835,40759972-407601... 41 6e-04
01_07_0052 - 40767252-40767347,40767455-40767562,40767689-407678... 38 0.004
11_04_0455 + 17903921-17904046,17904149-17904214,17905028-179051... 34 0.089
07_01_0675 + 5055842-5055950,5056036-5056193,5056276-5057067,505... 30 1.1
09_04_0629 - 19098087-19098516,19099120-19099370 30 1.5
10_08_0921 + 21586034-21586229,21586464-21586576,21586768-215868... 29 1.9
02_02_0549 + 11410129-11412180 28 4.4
10_05_0076 + 8872765-8872932,8874727-8874822,8875843-8875955,887... 28 5.9
09_04_0523 + 18310695-18311837,18312050-18312109,18312232-183123... 28 5.9
07_01_1053 + 9247272-9247386,9248192-9248331 28 5.9
06_03_0823 - 25026949-25027551,25027635-25027742,25027994-250281... 28 5.9
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 28 5.9
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526... 28 5.9
01_07_0042 + 40697153-40697407,40697479-40698081 28 5.9
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 28 5.9
01_06_0628 + 30707353-30707548,30707846-30707958,30708090-307081... 28 5.9
01_01_1066 - 8400548-8400892,8401052-8401140,8401232-8401325 27 7.7
>01_07_0051 -
40759529-40759624,40759728-40759835,40759972-40760138,
40760670-40760796,40760885-40761046,40761235-40761398,
40761561-40761654,40761736-40761860,40762304-40762449,
40762796-40762884,40763453-40763518,40763824-40763973
Length = 497
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Frame = +1
Query: 4 PPVVAASLKSLDLV------ERSGELRQRLRQNTTAFREGLKAAGLTVAGD-DHPICPVM 162
PP V + +++++ +R + ++R+N+ FR L+ G V GD D P+ P+M
Sbjct: 353 PPAVQQVISAIEVILGEDGSDRGAKKLAQIRENSNFFRSELEKMGFEVLGDNDSPVMPIM 412
Query: 163 VGEASLAVDLASGMLERGVYVVAFSYPVVP 252
+ + + L + V +V S+P P
Sbjct: 413 LYNPAKMPAFSRECLRQKVAIVTVSFPATP 442
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 215 VSTWSPSATPWCRSAARVRVQLSAAHSSGDVTRAVQAFAEVAKNVGI 355
+ T S ATP AR R+ +SA+HS D+ + ++ ++V VGI
Sbjct: 433 IVTVSFPATPLL--LARARICISASHSREDLIKGLEVISKVGDLVGI 477
>01_07_0052 -
40767252-40767347,40767455-40767562,40767689-40767855,
40767930-40768056,40768138-40768299,40768467-40768630,
40768722-40768815,40768892-40769016,40769110-40769255,
40769361-40769449,40769564-40769608,40770165-40770230,
40770332-40770457
Length = 504
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Frame = +1
Query: 4 PPVVAASLKSLDLV------ERSGELRQRLRQNTTAFREGLKAAGLTVAGD-DHPICPVM 162
PP V + ++ ++ R + ++R+N+ FR L+ G V GD D P+ P+M
Sbjct: 360 PPAVQQVISAIKVILGEDGSNRGAKKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIM 419
Query: 163 VGEASLAVDLASGMLERGVYVVAFSYPVVP 252
+ + + L + V VV ++P P
Sbjct: 420 LYNPAKIPAFSRECLRQHVAVVTVAFPATP 449
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 260 ARVRVQLSAAHSSGDVTRAVQAFAEVAKNVGI 355
AR R+ +SA+HS D+ + ++ ++V VGI
Sbjct: 453 ARARICISASHSREDLIKGLEVISKVGDLVGI 484
>11_04_0455 +
17903921-17904046,17904149-17904214,17905028-17905116,
17905513-17905658,17905743-17905867,17905964-17906057,
17906144-17906307,17906449-17906610,17906683-17906809,
17906854-17906862,17906912-17907078,17907113-17907307,
17907398-17907490
Length = 520
Score = 33.9 bits (74), Expect = 0.089
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 70 RLRQNTTAFREGLKAAGLTVAGD-DHPICPVMV 165
R+R+N+ FR LK G V GD D P+ P+M+
Sbjct: 376 RIRENSNFFRSELKKMGFEVLGDNDSPVMPIML 408
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 260 ARVRVQLSAAHSSGDVTRAVQAFAEVAKNVGI 355
AR R+ +SA+H+ D+ +A+ + V VGI
Sbjct: 470 ARARICISASHTREDLIKALDVISRVGDLVGI 501
>07_01_0675 +
5055842-5055950,5056036-5056193,5056276-5057067,
5057544-5057760,5058280-5058449,5058986-5059630
Length = 696
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +1
Query: 19 ASLKSLDLVERSGELRQRLRQNTTAFREGLKAAGLTVAGDDHPICPVMVGEASLAVD 189
+S + +DLV + G R+ + TTA+ G T A D I PVM G A AV+
Sbjct: 483 SSYEEVDLVIKGGNYGWRVLEGTTAYLPLASPGGNTSAADIDAIPPVM-GYAHSAVN 538
>09_04_0629 - 19098087-19098516,19099120-19099370
Length = 226
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +3
Query: 162 GWRS--ITGCGLGFRNVRAWCLRGRLQLPRGAEA 257
GW + G G G R W LR +LPR AEA
Sbjct: 124 GWEAGGSAGTGDGLEEARRWHLRVETELPRAAEA 157
>10_08_0921 +
21586034-21586229,21586464-21586576,21586768-21586875,
21586967-21587205,21587301-21587399,21587448-21587535,
21587617-21587750,21588274-21588362,21588718-21588751,
21588830-21588898,21589216-21589339
Length = 430
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 254 SAARVRVQLSAAHSSGDVTRAVQA 325
++ R+R+ LSA+HSS D+ R V A
Sbjct: 387 NSCRLRITLSASHSSDDIKRLVDA 410
>02_02_0549 + 11410129-11412180
Length = 683
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 76 RQNTTAFREGLKAAGLTVAGDDHPICPVMVGEASLAVDLASGMLERGVYVVAFSYPV 246
R N T G++ + H + V+VGE+ + A+G L YV+ +S+ V
Sbjct: 219 RVNVTLAPLGVRKPARPLLSAMHDLSTVIVGESYIGFSSATGTLSTQHYVLGWSFGV 275
>10_05_0076 +
8872765-8872932,8874727-8874822,8875843-8875955,
8876078-8876144,8876246-8876338,8876496-8876648,
8876761-8876849,8876976-8877081,8877178-8877265,
8877375-8877493,8877626-8877787,8877917-8878113,
8878229-8878317,8878409-8878518,8878622-8878735,
8878990-8879097,8879182-8879784
Length = 824
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 111 GGRPHCGRRRPSHLSGNGWRSITGCG 188
GG HC R G+G + +TGCG
Sbjct: 668 GGCHHCDYRGVFQAEGDGQKCLTGCG 693
>09_04_0523 +
18310695-18311837,18312050-18312109,18312232-18312324,
18312675-18312731,18313321-18313359
Length = 463
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = -2
Query: 463 KFHFIHVHQVARAPFFFNGPKNVKKLVSKFKILIFNDAY 347
+F +H+ + R P FF +N+ L+ + ++F++A+
Sbjct: 55 QFAMVHIQRAPRRPLFFFQRENLVHLLYPSEAILFDEAW 93
>07_01_1053 + 9247272-9247386,9248192-9248331
Length = 84
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 100 HGKLSCSGVDVDGV 59
HG L CSGVD DGV
Sbjct: 7 HGSLMCSGVDGDGV 20
>06_03_0823 -
25026949-25027551,25027635-25027742,25027994-25028107,
25028200-25028309,25028432-25028520,25028637-25028833,
25028961-25029122,25029255-25029373,25029488-25029541,
25029687-25029769,25029894-25029982,25030105-25030257,
25030373-25030465,25032070-25032136,25032238-25032350,
25033466-25033561,25034415-25034594
Length = 809
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 111 GGRPHCGRRRPSHLSGNGWRSITGCG 188
GG HC R G+G + +TGCG
Sbjct: 653 GGCHHCDYRGVFQAEGDGQKCLTGCG 678
>02_05_0197 -
26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 190 LASGMLERGVYVVAFSYPVVPKRGASAGATERGALV 297
LA +L+RG+ VA S+P + + A+A A+E G L+
Sbjct: 166 LADDVLDRGLVAVAASFPNLRRLSATA-ASESGGLM 200
>01_07_0050 -
40751994-40752086,40752193-40752300,40752501-40752667,
40752756-40752882,40752984-40753145,40753674-40753837,
40753931-40754024,40754160-40754284,40754387-40754532,
40754676-40754764,40755524-40755589,40755990-40756148
Length = 499
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 263 RVRVQLSAAHSSGDVTRAVQAFAEVAKNVGI 355
R+R+ +SA+HS D+ + ++ + V VGI
Sbjct: 450 RIRICISASHSREDLIKGLEVISNVGDLVGI 480
>01_07_0042 + 40697153-40697407,40697479-40698081
Length = 285
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 206 NIPEAKSTASDASPTITGQMGW 141
NI ++K A+DAS I+G M W
Sbjct: 34 NISDSKVVAADASAAISGSMDW 55
>01_06_1331 +
36373059-36373338,36374190-36374263,36374530-36374699,
36374731-36374822,36375087-36375323,36375922-36375980,
36376462-36376644,36377347-36377437,36377959-36378002,
36378085-36378207
Length = 450
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 135 RRPSHLSGNGWRSITGCGLGF 197
R P+ G+GWR + G G GF
Sbjct: 68 RLPAAAGGDGWRDVCGGGCGF 88
>01_06_0628 +
30707353-30707548,30707846-30707958,30708090-30708197,
30708305-30708543,30708774-30708861,30708942-30709075,
30709285-30709498,30709671-30709759,30710194-30710262,
30710560-30710683
Length = 457
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 251 RSAARVRVQLSAAHSSGDVTRAVQAFA 331
+++ R+R+ LSA+HS D+ R V A +
Sbjct: 413 QNSCRLRITLSASHSLDDIKRLVDALS 439
>01_01_1066 - 8400548-8400892,8401052-8401140,8401232-8401325
Length = 175
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 415 FNGPKNVKKLVSKFKILIFNDAYVFSDLCEGLHRSG 308
F+G K + + I+ F+D Y+FS C+G +R G
Sbjct: 39 FHGQKRSTEDIVARAIICFSDRYIFSG-CQGQYRLG 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,822
Number of Sequences: 37544
Number of extensions: 305250
Number of successful extensions: 1030
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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