Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0624
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53465| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.004
SB_2298| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_17198| Best HMM Match : HEAT (HMM E-Value=1.8e-15)                  28   6.0  
SB_2651| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_53465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 15/33 (45%), Positives = 24/33 (72%)
 Frame = +2

Query: 263 RVRVQLSAAHSSGDVTRAVQAFAEVAKNVGIVK 361
           R+RVQLSA HS  ++   VQ F +V K++G+++
Sbjct: 2   RIRVQLSAGHSKEEIDTCVQTFIDVGKDMGVLQ 34


>SB_2298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 1   PPPVVAASLKSLDLVERSGELRQRLRQNTTAFREGLKA-AGLTVAGD-DHPICPVMV 165
           PP +  A++++LD++E    +   L+     F + LK   GL + G+ D PI  + V
Sbjct: 38  PPMLATAAIEALDIMEEKDGMFNDLQMKARLFHQELKGIKGLRIDGERDSPIIHLRV 94


>SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 120 PHCGRRRPSHLSGNGWRSITGCGLGFRNVRAWC 218
           PHC     S+L    W+   GC   ++++  WC
Sbjct: 217 PHCQNWLSSNLRLTNWKRKLGCRCQYKHIVDWC 249


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 11/60 (18%)
 Frame = +1

Query: 7   PVVAASLKS-LDLVERSGELR-------QRLRQNTTAFREGLKAA---GLTVAGDDHPIC 153
           P++ A  K+  DLV+R+GE++       Q++  N T++R  L+ +   G   AG D  IC
Sbjct: 820 PLLCAGYKNNFDLVQRTGEIKRVHSVDTQKISGNGTSYRTVLRISCHPGYQFAGSDVSIC 879


>SB_17198| Best HMM Match : HEAT (HMM E-Value=1.8e-15)
          Length = 802

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 79  GVDVDGVHRYVLPSLETL 26
           GVD+D + R+VLP+L TL
Sbjct: 758 GVDIDTISRHVLPALVTL 775


>SB_2651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 105 TEGGRPHCGRRRPSHLSGNG-WRSITG 182
           T+GG P  G RR   + G+G WR + G
Sbjct: 38  TDGGDPFMGMRRRIVMDGHGRWREVRG 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,968,635
Number of Sequences: 59808
Number of extensions: 320109
Number of successful extensions: 769
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)