Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0624
(560 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70311-1|CAA94376.2| 420|Caenorhabditis elegans Hypothetical pr... 83 1e-16
Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical pr... 41 7e-04
U50307-2|AAA92303.1| 558|Caenorhabditis elegans Serine palmitoy... 33 0.11
U50307-1|AAK71365.1| 586|Caenorhabditis elegans Serine palmitoy... 33 0.11
U23519-1|AAK31500.1| 134|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z82093-1|CAB05018.1| 229|Caenorhabditis elegans Hypothetical pr... 28 5.3
U41034-8|AAA82382.1| 669|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 7.0
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 27 9.2
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 27 9.2
>Z70311-1|CAA94376.2| 420|Caenorhabditis elegans Hypothetical
protein T25B9.1 protein.
Length = 420
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/86 (43%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +1
Query: 4 PPVVAASLKSLDLVERSGELRQRLRQNTTAFREGLKAAGLTVAGDD--HPICPVMVGEAS 177
P +V +S+K DL+ L+ N + FR+ + A G T+ G+D HPICPV++G+A
Sbjct: 300 PSIVGSSIKVFDLLMNDSSFIGSLQTNVSHFRKSMAANGFTILGNDPTHPICPVLLGDAK 359
Query: 178 LAVDLASGMLERGVYVVAFSYPVVPK 255
LA +A +L+ G+YV+ FS+PVVPK
Sbjct: 360 LAATMADELLKMGIYVIGFSFPVVPK 385
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +2
Query: 251 RSAARVRVQLSAAHSSGDVTRAVQAFAEVAKNVGIV 358
+ AR+RVQ+SAAHS + + ++AFA V K + ++
Sbjct: 385 KGKARIRVQISAAHSKQHIDQLIEAFATVGKKLNVI 420
>Z81127-5|CAB03390.2| 512|Caenorhabditis elegans Hypothetical
protein T22G5.5 protein.
Length = 512
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 70 RLRQNTTAFREGLKAAGLTVAGD-DHPICPVMVGEASLAVDLASGMLERGVYVVAFSYPV 246
+L +N+ FR+ L+ G V G+ D P+ P+M + V+ + ML+ + +VA YP
Sbjct: 407 QLLENSRYFRKELRKRGFLVYGNNDSPVVPLMTFYITKVVEFSRRMLKHNIGIVAVGYPA 466
Query: 247 VP 252
P
Sbjct: 467 TP 468
>U50307-2|AAA92303.1| 558|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 2, isoform a protein.
Length = 558
Score = 33.5 bits (73), Expect = 0.11
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +1
Query: 4 PPVVAASLKSLDLV-----ERSGELR-QRLRQNTTAFREGLKAAGLTVAG-DDHPICPVM 162
PP+ S+ ++ + G R +RL +N+ FR LK G V G +D P+ P++
Sbjct: 418 PPIAQQIYTSMSIIMGKDGTKDGAQRIERLARNSHYFRMKLKQNGFIVYGSNDSPVVPML 477
Query: 163 VGEASLAVDLASGMLERGVYVVAFSYP 243
+ ++ ML R + V S+P
Sbjct: 478 IYFPTMCGFYGREMLARNIGCVVVSFP 504
>U50307-1|AAK71365.1| 586|Caenorhabditis elegans Serine palmitoyl
transferase familyprotein 2, isoform b protein.
Length = 586
Score = 33.5 bits (73), Expect = 0.11
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +1
Query: 4 PPVVAASLKSLDLV-----ERSGELR-QRLRQNTTAFREGLKAAGLTVAG-DDHPICPVM 162
PP+ S+ ++ + G R +RL +N+ FR LK G V G +D P+ P++
Sbjct: 446 PPIAQQIYTSMSIIMGKDGTKDGAQRIERLARNSHYFRMKLKQNGFIVYGSNDSPVVPML 505
Query: 163 VGEASLAVDLASGMLERGVYVVAFSYP 243
+ ++ ML R + V S+P
Sbjct: 506 IYFPTMCGFYGREMLARNIGCVVVSFP 532
>U23519-1|AAK31500.1| 134|Caenorhabditis elegans Hypothetical
protein F26G1.3 protein.
Length = 134
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 115 PPSVLHGKLSCSGVDVDGV 59
P V+HGKL C+G ++G+
Sbjct: 9 PSFVIHGKLKCNGYPINGI 27
>Z82093-1|CAB05018.1| 229|Caenorhabditis elegans Hypothetical
protein ZK39.2 protein.
Length = 229
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 7/46 (15%)
Frame = +3
Query: 153 SGNGWRSITGCGLGFRNVR----AWCLR---GRLQLPRGAEARREC 269
+GNG R+ GC G+R+ R +WC+R GRL +GA A+ +C
Sbjct: 48 NGNGGRANGGCETGWRHFRRPSGSWCVRVFGGRLN--QGA-AQSQC 90
>U41034-8|AAA82382.1| 669|Caenorhabditis elegans Hypothetical
protein M02D8.5 protein.
Length = 669
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = -2
Query: 367 LIFNDAYVFSDLCEGLHRSGD-----VTGRVRRAQLH 272
++FNDA+ F D+ L +SG+ +TGR LH
Sbjct: 419 IVFNDAFFFEDISNLLLKSGNTYEFVITGRAGHQVLH 455
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +3
Query: 123 HCGRRRPSHLSGNGWRSITGCGLGFRNVRAWCLRGRLQLPRGAEARRECGCN*ARRTRPV 302
HC R + + S S+T CG G R C RGR L +E + N PV
Sbjct: 1693 HCPRWKTTTWSSC---SVT-CGRGIRRREVQCYRGRKNLVSDSECNPKTKLNSVANCFPV 1748
Query: 303 TSP 311
P
Sbjct: 1749 ACP 1751
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +3
Query: 123 HCGRRRPSHLSGNGWRSITGCGLGFRNVRAWCLRGRLQLPRGAEARRECGCN*ARRTRPV 302
HC R + + S S+T CG G R C RGR L +E + N PV
Sbjct: 1693 HCPRWKTTTWSSC---SVT-CGRGIRRREVQCYRGRKNLVSDSECNPKTKLNSVANCFPV 1748
Query: 303 TSP 311
P
Sbjct: 1749 ACP 1751
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 27.1 bits (57), Expect = 9.2
Identities = 26/96 (27%), Positives = 41/96 (42%)
Frame = +1
Query: 1 PPPVVAASLKSLDLVERSGELRQRLRQNTTAFREGLKAAGLTVAGDDHPICPVMVGEASL 180
PPP A + S + +L+ R +Q A G+KAA P P G +L
Sbjct: 252 PPPPPAQLMASSGTPSLAEQLKMRSQQGLKATSNGVKAAAA------EPEKPAAKGAGNL 305
Query: 181 AVDLASGMLERGVYVVAFSYPVVPKRGASAGATERG 288
+L + + +R + A S V K S G+++ G
Sbjct: 306 MSELEAQLNKRKM-TQAKSDAVDSKSNTSNGSSDSG 340
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 27.1 bits (57), Expect = 9.2
Identities = 26/96 (27%), Positives = 41/96 (42%)
Frame = +1
Query: 1 PPPVVAASLKSLDLVERSGELRQRLRQNTTAFREGLKAAGLTVAGDDHPICPVMVGEASL 180
PPP A + S + +L+ R +Q A G+KAA P P G +L
Sbjct: 238 PPPPPAQLMASSGTPSLAEQLKMRSQQGLKATSNGVKAAAA------EPEKPAAKGAGNL 291
Query: 181 AVDLASGMLERGVYVVAFSYPVVPKRGASAGATERG 288
+L + + +R + A S V K S G+++ G
Sbjct: 292 MSELEAQLNKRKM-TQAKSDAVDSKSNTSNGSSDSG 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,634,337
Number of Sequences: 27780
Number of extensions: 231454
Number of successful extensions: 692
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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