Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0624
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.69 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.4  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 243 RGAEARRECGCN*ARRTRPVTSPERCKPSQR 335
           R A  R  C C   R  R      RCKPSQR
Sbjct: 398 RRAFVRILCACCPGRVRRRYQPAFRCKPSQR 428


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 142 HPICPVMVGEASLAVDLASGMLERGVYVVAFSYPV 246
           H I  +       A+ +   ++ER VY V  S+P+
Sbjct: 71  HTIIEMDSNPIKTALSVCKSLIERQVYAVVVSHPL 105


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 352 AYVFSDLCEGLHRSGDV 302
           +YV  D  EG+ +SGDV
Sbjct: 188 SYVKDDGTEGIAKSGDV 204


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 497 EETDTVLHIEIEVSLHSRA 441
           ++  T LH++I V +HS A
Sbjct: 507 KDRSTGLHLQIRVGVHSGA 525


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,638
Number of Sequences: 438
Number of extensions: 3043
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)