Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0624
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2) id...    39   0.002
At3g48790.1 68416.m05328 serine C-palmitoyltransferase, putative...    39   0.003
At3g48780.1 68416.m05327 serine C-palmitoyltransferase, putative...    38   0.003
At2g34490.1 68415.m04235 cytochrome P450 family protein similar ...    27   6.5  
At5g04620.2 68418.m00464 aminotransferase class I and II family ...    27   8.6  
At5g04620.1 68418.m00465 aminotransferase class I and II family ...    27   8.6  
At2g23140.1 68415.m02763 armadillo/beta-catenin repeat family pr...    27   8.6  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    27   8.6  

>At5g23670.1 68418.m02775 serine C-palmitoyltransferase (LCB2)
           identical to serine palmitoyltransferase [Arabidopsis
           thaliana] GI:9309380; similar to serine
           palmitoyltransferase from Solanum tuberosum
           [GI:4995890], Homo sapiens [SP|O15270], Mus musculus
           [SP|P97363]; contains Pfam profile PF00155:
           aminotransferase, classes I and II
          Length = 489

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 49  RSGELRQRLRQNTTAFREGLKAAGLTVAGD-DHPICPVMVGEASLAVDLASGMLERGVYV 225
           R  +   R+R+N+  FR  L+  G  V GD D P+ P+M+   +     +   L + V V
Sbjct: 366 RGAQKLARIRENSNFFRAELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQKVAV 425

Query: 226 VAFSYPVVP 252
           V   +P  P
Sbjct: 426 VVVGFPATP 434


>At3g48790.1 68416.m05328 serine C-palmitoyltransferase, putative
           similar to serine palmitoyltransferase from Solanum
           tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus
           musculus [SP|P97363]
          Length = 350

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +1

Query: 55  GELR-QRLRQNTTAFREGLKAAGLTVAGD-DHPICPVMVGEASLAVDLASGMLERGVYVV 228
           GEL+  R+R+N+  FR  L+  G  V G  D PI P+M+   +     +   L   + +V
Sbjct: 224 GELKLARIRENSNFFRAELQKMGFKVLGVYDSPIMPIMLYNPAKIAAFSRECLRENLAIV 283

Query: 229 AFSYPVVP 252
             S+P +P
Sbjct: 284 VVSFPPIP 291


>At3g48780.1 68416.m05327 serine C-palmitoyltransferase, putative
           similar to serine palmitoyltransferase from Solanum
           tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus
           musculus [SP|P97363]
          Length = 489

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 49  RSGELRQRLRQNTTAFREGLKAAGLTVAGD-DHPICPVMVGEASLAVDLASGMLERGVYV 225
           R  +   R+R+N+  FR  L+  G  V GD D P+ P+M+   +     +   L   + V
Sbjct: 366 RGAQKLARIRENSNFFRAELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRENLAV 425

Query: 226 VAFSYPVVP 252
           V   +P  P
Sbjct: 426 VVVGFPATP 434


>At2g34490.1 68415.m04235 cytochrome P450 family protein similar to
           Cytochrome P450 61 (C-22 sterol desaturase) (SP:P54781)
           {Saccharomyces cerevisiae}; contains Pfam profile:
           PF00067 cytochrome P450; supported by full-length cDNA:
           Ceres:158108.
          Length = 499

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 372 LNFETNFLTFLGPLKKNGARATWCT 446
           LN ET+   F+GP     AR T+CT
Sbjct: 184 LNLETSQTVFVGPYLDKEARNTFCT 208


>At5g04620.2 68418.m00464 aminotransferase class I and II family
           protein similar to 8-amino-7-oxononanoate synthase,
           Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
           subtilis [SP|P53556]; contains Pfam protile PF00155
           aminotransferase, classes I and II
          Length = 476

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 254 SAARVRVQLSAAHSSGDVTRAVQAFA 331
           ++ R+RV LSAAH++ DV + + A +
Sbjct: 431 NSCRLRVTLSAAHTTEDVKKLITALS 456


>At5g04620.1 68418.m00465 aminotransferase class I and II family
           protein similar to 8-amino-7-oxononanoate synthase,
           Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
           subtilis [SP|P53556]; contains Pfam protile PF00155
           aminotransferase, classes I and II
          Length = 343

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 254 SAARVRVQLSAAHSSGDVTRAVQAFA 331
           ++ R+RV LSAAH++ DV + + A +
Sbjct: 298 NSCRLRVTLSAAHTTEDVKKLITALS 323


>At2g23140.1 68415.m02763 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 811

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = -1

Query: 191 KSTASDASPTITGQMGWSSPATVRPAAFSPSRKA 90
           KS   DAS + TG+  +SS AT R  A SPSR A
Sbjct: 341 KSHDWDASSSETGKPSFSSRATEREGA-SPSRPA 373


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 200 PEAKSTASDASPTITGQMGWSSPATVRPAAFSPS 99
           P + S  S  SP+++     SSP++  P++ SPS
Sbjct: 72  PPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPS 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,044,247
Number of Sequences: 28952
Number of extensions: 219516
Number of successful extensions: 587
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)