Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0623
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 148 6e-36
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.) 137 8e-33
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.) 133 1e-31
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.) 99 4e-21
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056) 85 8e-17
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0) 69 3e-12
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23) 32 0.58
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) 31 1.0
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0) 31 1.0
SB_54173| Best HMM Match : UPAR_LY6 (HMM E-Value=2) 29 3.1
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5) 28 7.2
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 148 bits (358), Expect = 6e-36
Identities = 66/84 (78%), Positives = 77/84 (91%)
Frame = +1
Query: 256 GEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDE 435
GEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+IA GVH R+DE
Sbjct: 13 GEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDIAQGVHIGRSDE 72
Query: 436 EVGAGDQGLMFGYATDETEECMPL 507
++GAGDQGLMFGYATDET+E MPL
Sbjct: 73 DLGAGDQGLMFGYATDETDELMPL 96
Score = 111 bits (267), Expect = 6e-25
Identities = 48/84 (57%), Positives = 63/84 (75%)
Frame = +3
Query: 510 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSEKI 689
VVLAH LN+++A+ RRNG W RPDSKTQVT EY F GG VP RVHT+V+S+QH I
Sbjct: 98 VVLAHGLNKRLADCRRNGSLPWVRPDSKTQVTVEYKFQGGKAVPLRVHTIVISVQHDPNI 157
Query: 690 TLETLRDEIREKVIKEVIPAQYLD 761
L+ +R E+ + V+KEV+P +Y+D
Sbjct: 158 ELDVMRKELMDYVVKEVVPEKYID 181
>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 137 bits (332), Expect = 8e-33
Identities = 63/84 (75%), Positives = 72/84 (85%)
Frame = +1
Query: 256 GEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDE 435
GEITS A VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+QQS +IA GVH R +E
Sbjct: 82 GEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHVGREEE 141
Query: 436 EVGAGDQGLMFGYATDETEECMPL 507
+VGAGDQGLMFGYATDETEE MPL
Sbjct: 142 DVGAGDQGLMFGYATDETEELMPL 165
Score = 117 bits (282), Expect = 9e-27
Identities = 51/84 (60%), Positives = 66/84 (78%)
Frame = +3
Query: 510 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSEKI 689
VVLAHK+NQK+AE RR+G WARPDSKTQVT EY F G +P RVHT+V+S+QH I
Sbjct: 167 VVLAHKMNQKLAEYRRDGTLPWARPDSKTQVTVEYKFEHGRAIPLRVHTIVISVQHDPTI 226
Query: 690 TLETLRDEIREKVIKEVIPAQYLD 761
T+E LR E+ EK++K V+P+++LD
Sbjct: 227 TMENLRKELMEKIVKTVVPSKFLD 250
Score = 102 bits (245), Expect = 3e-22
Identities = 45/52 (86%), Positives = 49/52 (94%)
Frame = +2
Query: 98 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLL 253
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACET+ KTGM+LL
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILL 80
>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 133 bits (322), Expect = 1e-31
Identities = 61/84 (72%), Positives = 69/84 (82%)
Frame = +1
Query: 256 GEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDE 435
GEITS A VDYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q IA VH NR D+
Sbjct: 103 GEITSNARVDYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVHLNRRDD 162
Query: 436 EVGAGDQGLMFGYATDETEECMPL 507
E+GAGDQGLMFGYATDETEE MPL
Sbjct: 163 EIGAGDQGLMFGYATDETEELMPL 186
Score = 97.1 bits (231), Expect = 1e-20
Identities = 45/61 (73%), Positives = 48/61 (78%)
Frame = +2
Query: 80 YDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLLA 259
Y D FLFTSESV EGH DKMCDQISDA+LDAHL QDP AKVACET TKTG+VLL
Sbjct: 44 YSTSDCDNFLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATKTGLVLLFG 103
Query: 260 K 262
+
Sbjct: 104 E 104
Score = 87.8 bits (208), Expect = 8e-18
Identities = 39/83 (46%), Positives = 55/83 (66%)
Frame = +3
Query: 513 VLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSEKIT 692
VLAHKL ++AE R+ W PD KTQVT +Y GA +P+RVHTV++S QH+ +
Sbjct: 189 VLAHKLCARLAECRKGKILPWLLPDGKTQVTVDYRLERGACIPERVHTVLISTQHTPDVG 248
Query: 693 LETLRDEIREKVIKEVIPAQYLD 761
+E +R ++E +I VIP +YLD
Sbjct: 249 IEEIRHHLKETIINHVIPEKYLD 271
>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 98.7 bits (235), Expect = 4e-21
Identities = 42/52 (80%), Positives = 49/52 (94%)
Frame = +2
Query: 98 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLL 253
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACE++ KTGM+++
Sbjct: 9 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACESVAKTGMIVV 60
Score = 56.0 bits (129), Expect = 3e-08
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = +1
Query: 256 GEITSKANVDYQKVVRETVKHIGYDDSSK 342
GEITS ANVDYQKVVR+T+K IGYDDSSK
Sbjct: 62 GEITSLANVDYQKVVRDTIKQIGYDDSSK 90
>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
Length = 70
Score = 84.6 bits (200), Expect = 8e-17
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +2
Query: 98 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVAC 220
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVAC
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVAC 69
>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
Length = 192
Score = 69.3 bits (162), Expect = 3e-12
Identities = 36/83 (43%), Positives = 54/83 (65%)
Frame = +3
Query: 510 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQHSEKI 689
V AH+L ++ +ELRRNG W RPD+K+QVT + G + +V VV+S QH I
Sbjct: 34 VYYAHRLVERQSELRRNGTLPWLRPDAKSQVTINW--EGDS---PKVDAVVLSTQHDPSI 88
Query: 690 TLETLRDEIREKVIKEVIPAQYL 758
+L+ LR+ + E +IK V+PA++L
Sbjct: 89 SLDDLREAVLENIIKPVLPAEWL 111
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = +1
Query: 433 EEVGAGDQGLMFGYATDETEECMP 504
E+ GAGDQGLMFGYAT+ET+ MP
Sbjct: 8 EDQGAGDQGLMFGYATNETDSLMP 31
>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
Length = 390
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 238 RYGAFVGEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 357
+ + GEITS N+D +K+ + K I YD G+DY+
Sbjct: 97 KINSVTGEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139
>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
Length = 681
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 478 LHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 380
L N T+ P + PQ P H SHA + ++I G+
Sbjct: 99 LGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131
>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
Length = 550
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = -1
Query: 291 LIIHVSFGCDFANKSTIPVLVMV----SHATFASGS*FRCASRIASLIWSHILSG 139
L H++F C T P L ++ S + A + FRC+ R S++W H+ +G
Sbjct: 263 LTCHLNFACRVCR--TYPRLHVIPSSISDSDLAKVASFRCSGRFPSIVWRHMTNG 315
>SB_54173| Best HMM Match : UPAR_LY6 (HMM E-Value=2)
Length = 141
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 724 FSLISSRKVSRVIFSECCSDTTTV*TLCGTVAPPANTYSQVTC 596
FSL +RK ++ + C+D T +CG YS V+C
Sbjct: 47 FSLNGTRKDGSPVYLQYCADHTKCDDICGNFNSTILNYSLVSC 89
>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1155
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 29 MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 205
MP G +K N + D D +L +S+ + D++C + I AHL QDPD
Sbjct: 196 MPYGGGKRGKSKKNSSTLDTGDLETWLKGRKSITRVRNHDELCAARALVIGMAHLTQDPD 255
>SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5)
Length = 1595
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/98 (25%), Positives = 40/98 (40%)
Frame = -3
Query: 763 PSRYCAGITSLMTFSLISSRKVSRVIFSECCSDTTTV*TLCGTVAPPANTYSQVTCVFES 584
P C I + +L +++ +SR + CC +C T+A +T ++
Sbjct: 990 PLNCCHAIYRTIAVTLSTAQFLSRYLPHNCCH------AICRTIAVTLSTAQLLSRYLPH 1043
Query: 583 GLAHQNSPFRLSSAIF*LSLCASTTSTACILLSHLLHN 470
H P I+ A T STA +L +LLHN
Sbjct: 1044 NCCHVIYPTITVPRIY--RKIAVTLSTAQLLSRYLLHN 1079
>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 29 MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 205
MP + G +K N + D D +L S+ + D++C + I AHL +DPD
Sbjct: 241 MPFGAGKRGKSKKNSSTLDTGDLETWLKGKRSITRVRNHDELCAARATVIGMAHLTKDPD 300
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,654,459
Number of Sequences: 59808
Number of extensions: 621554
Number of successful extensions: 1714
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1712
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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