Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0622
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 31 0.18
SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb... 29 0.97
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 27 2.2
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 27 2.2
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 3.0
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 27 3.9
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 27 3.9
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 27 3.9
SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces ... 27 3.9
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.2
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 26 5.2
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 6.8
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 26 6.8
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 9.0
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 9.0
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 25 9.0
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.0
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 25 9.0
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 31.1 bits (67), Expect = 0.18
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = +3
Query: 45 SSDDYNEGGYESYGDYEAQSTEHYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEIL 224
S DY YE Y ++ A + E ++++ +PD VK F + F E+L
Sbjct: 430 SGSDYT---YEQYINHSAVAFSFTEEIFEKNFVTVLPDFVKLFSISFGYWPAFSFYDELL 486
Query: 225 NLYENTFPTLLRNT 266
L N +P + +T
Sbjct: 487 KLLRNKYPKVYSST 500
>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 28.7 bits (61), Expect = 0.97
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 278 PWPDEDEVSPIVDND---NVFMILYKELYYRDIYARVPGGPKPEQRFHSFYNY 427
P+P + + P V N N F + D Y+R+P GP P++ +SF+++
Sbjct: 3 PFPLKSFIPPQVANPTALNAFPSSARMGRIVDFYSRLPHGPAPKKSSNSFFSW 55
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = -2
Query: 266 SISQECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRHFIIRRPVI 126
++S +CG G+L + L+ ++ H + D H + PV+
Sbjct: 678 NLSTQCGSGVLTDDDGLVVALWLTHYGEQTSRGTDVKYHLGLASPVV 724
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 114 YEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTY 215
+E YD S + DM KK L+ FRN +G+ Y
Sbjct: 327 FEDAYDIISKLSVSDMKKKLLIRFRN--EDGLDY 358
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 612 VPSLILSIKSFNFSWTQLCGTRPVLGKRLELINKLSISSHN 490
+P +++K FS+++L G PVLG + +++ HN
Sbjct: 1336 LPRDYVAVKVPQFSFSRLSGADPVLGVEMASTGEVACFGHN 1376
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -1
Query: 162 PCQAFYNKKTCHIPARSVLWTVLHSRHRIRNLPHYNRRWNTWLLIE 25
PC+A N CHI R+ W R P Y NT L IE
Sbjct: 59 PCKAVLNPY-CHIDTRAKFWICPFCLQRNMLPPQYKDISNTSLPIE 103
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 218 DPEPL*EYLPHTPEKYFEN----TPWPDEDEVSPIVDNDNVFMILYKELYYRDIYA 373
D PL YLP+ P YF N + ED + ++ N + + + Y+ +A
Sbjct: 505 DTPPLVIYLPNVPYNYFTNISTDRTYYTEDMIQQLLTNGLISSTVDNDTYFGQCFA 560
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 111 VLWTVLHSRHRIRNLPHYNRRWN 43
+L H+R I +LPH+ RRW+
Sbjct: 407 ILQLATHNRSFICSLPHFLRRWS 429
>SPBC19G7.18c ||SPBC19G7.11c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 197 NHVAKVNKEFLDHVRHFIIRRPVIFRLVVFCGLCFIVAIGFVTSLIIIVAGIHG 36
NH + KEFL+H ++ + R + LV F ++ VT + + I G
Sbjct: 14 NHFSDDQKEFLNHAKYRVKRNTIFGMLVGFSLPLYLARNKKVTPIRLYATSIIG 67
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = +3
Query: 72 YESYGDYEAQSTEHYEPEYDRSSYYKMPDMVKKFLVY----FRNMINEGVTYEILNLYEN 239
+ S+G Q H Y K+P + L++ + +++N VT I+ +
Sbjct: 553 FYSFGFGTLQHAMHMTQSAKIGHYMKVPPRLVAALLFTSGIWSSLVNSAVTGWIMYHVRD 612
Query: 240 TFPTLLRNTLKIHLGQMKMRSHLLWTMI 323
+ N + + + SHL+W ++
Sbjct: 613 VCTSNAENNMTCRSPKTQFNSHLIWGLV 640
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 413 SFYNYCDLFNYILSVTPVPLELPDQWLWELIDNLFINSNLLPSTG-LVPQS 562
S Y + L ++ PLELP Q L N + SN L G L P S
Sbjct: 337 SLTQYGAFYRGTLPLSAQPLELPSQQLLRSQSNAALRSNSLSMNGSLSPSS 387
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.8 bits (54), Expect = 6.8
Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = -2
Query: 377 LLHRCHGSIVLCIGS*IHYHCPQ*VRPHLHLAKVYF--QSISQECGEGILIEVQDLICYT 204
LL C + + I IHY + V+P+ + + F SI+ +L +V +
Sbjct: 351 LLGCCLNIVCMVIHITIHYTGKEFVQPYFIIYTLVFFGSSIANSPSVSLLTKVLHPKYHL 410
Query: 203 FINHVAKVNKEFLDHVRHFIIRRPVIFRLVVFCGLCFIVAIGFVTSLIII 54
N +++ D V F VVF +C I+ + V +L+II
Sbjct: 411 IGNVAVQISISLSDTVGAIFGGAFRSFSPVVFFAVCLILNVMSVLALLII 460
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 263 YFENTPWPDEDEVSPIVDNDNVFM 334
YF++ W D+D +SP + N+ M
Sbjct: 451 YFKDDSWMDDDYISPCMTTYNLTM 474
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 296 HLHLAKVYFQSISQECGEGILIEVQ 222
HL A +YF +S+ CG + +V+
Sbjct: 246 HLRSAVLYFMDLSEMCGYSVAAQVK 270
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 734 NDDQTRQPQKSGSPPDAYT 678
+DD KS SPPDA+T
Sbjct: 112 SDDSVFNESKSSSPPDAHT 130
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 66 GGYESYGDYEAQSTEHYEPEYDRSSYYKMPDMVKK 170
G Y+S D+ P Y + ++YK ++V K
Sbjct: 217 GAYKSPDDFPEGDFRRKAPRYQKENFYKNLELVTK 251
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 371 ARVPGGPKPEQRFHSFYNYCDLFNYILSVTPVPLELPDQWLWELID 508
A + PKPE + Y DL VTP PLE P E+++
Sbjct: 281 ANITALPKPEPKM---YENSDLTPARTPVTPAPLEKPVNLAPEVVE 323
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 627 EDAQYVPSLILSIKSFNFSWTQL 559
E ++PSL +S S+N W+ L
Sbjct: 193 ESKVHIPSLFVSTSSYNLLWSDL 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,326
Number of Sequences: 5004
Number of extensions: 70129
Number of successful extensions: 248
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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