Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0622
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766... 87 1e-17
01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712... 85 4e-17
08_01_0914 + 9010613-9013316,9013537-9013748 30 1.8
03_01_0289 + 2242584-2242931,2242973-2243005,2244158-2244241,224... 29 3.1
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 29 5.4
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 28 7.1
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 28 7.1
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 28 7.1
>05_03_0041 -
7662094-7662138,7662269-7662340,7663144-7663179,
7663356-7663449,7663533-7663681,7664525-7664864,
7666417-7666748,7667348-7667821
Length = 513
Score = 87.4 bits (207), Expect = 1e-17
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = +2
Query: 257 EKYFENTPWPDEDEVSPIVDNDNVFMILYKELYYRDIYARVPGGPKPEQRFHSFYNYCDL 436
+++F +TPWP + V+ D D+VF++LY+EL++R +ARV G P QR S+ NYC L
Sbjct: 45 DRHFRDTPWPPAEAVAAHCDGDHVFLLLYRELWFRHAHARVQ-GLTPAQRAESWDNYCSL 103
Query: 437 FNYILSVTPVPLELPDQWLWELID 508
F+ +L V ++LP+QWLW+++D
Sbjct: 104 FSVVLQGV-VNMQLPNQWLWDMVD 126
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +1
Query: 511 FVYQFQSFAQYRSRTTKLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQLE 678
FVYQFQSF QYR++ + EI L ++AW+V +LN L +LV+KS I LE
Sbjct: 128 FVYQFQSFCQYRAKLKNKTHEEIALLKQYDQAWSVYGVLNYLKALVEKSMIGEILE 183
>01_01_0906 -
7124686-7124730,7124854-7124925,7125257-7125383,
7125424-7125572,7126126-7126465,7126759-7127090,
7127327-7127860
Length = 532
Score = 85.4 bits (202), Expect = 4e-17
Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 EKYFENTPWPDEDEVSPIVDNDNVFMILYKELYYRDIYARVPGGPKPE------QRFHSF 418
++ F + PWP + VSP D D+VF++LY+EL+YR YAR QR S+
Sbjct: 58 DRLFRDAPWPAAEAVSPYCDGDHVFLLLYRELWYRHAYARASSSSSSSAPLTAGQRAESW 117
Query: 419 YNYCDLFNYILSVTPVPLELPDQWLWELID 508
NYCDLF+ +L V ++LP+QWLW+++D
Sbjct: 118 ANYCDLFSVVLHGV-VNMQLPNQWLWDMVD 146
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/56 (51%), Positives = 37/56 (66%)
Frame = +1
Query: 511 FVYQFQSFAQYRSRTTKLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQLE 678
FVYQFQSF QYR++ S E+ L +KAWNV +LN L +LV+KS I + LE
Sbjct: 148 FVYQFQSFCQYRAKLKNKSDDELHQLKQFDKAWNVYGVLNYLQALVEKSMIAQILE 203
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 150 MPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTL 254
+PD VK F+ + + + YEI +YE F L
Sbjct: 22 VPDSVKTFVAHMYRHVRDKNVYEIHQMYEGGFQRL 56
>08_01_0914 + 9010613-9013316,9013537-9013748
Length = 971
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = -1
Query: 660 IRLVYERVQNIEDAQYVPSLILSIKS---FNFSWTQLCGTRPV-LGKRLELINKLSISSH 493
++L+Y VQ+ +VP I +I S F+ + +L G+ P+ +G +L IN+ + +
Sbjct: 226 VKLIYFSVQDNHLEGHVPLSIFNISSIRFFDLGFNRLSGSLPLDVGVKLPRINRFNTLA- 284
Query: 492 NHWSG 478
NH+ G
Sbjct: 285 NHFEG 289
>03_01_0289 +
2242584-2242931,2242973-2243005,2244158-2244241,
2244640-2245782
Length = 535
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -1
Query: 162 PCQAFYNKKT-----CHIPARSVLWTVLHSRHRIRNLPHYNRR 49
PC AF+ K T CH ++ WT + + +NLP NRR
Sbjct: 166 PC-AFWGKGTEPTDHCHATDKNAKWTKMRQSLKRKNLPSSNRR 207
>04_03_0941 -
20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 33 TTMYSSDDYNEGG---YESYGDYEAQSTEHYEPEYDRS 137
+T S YN+ G Y S G Y ST++YE Y++S
Sbjct: 880 STDNSESGYNKSGTGEYGSGGGYNKSSTDNYESGYNKS 917
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 248 HTPEKYFENTPWP-DEDEVSPIVDNDNVFMILY 343
+T K+ EN PWP ++ P DN N + Y
Sbjct: 332 YTDAKHAENVPWPLKTNDFFPYADNPNAYWTGY 364
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 263 ISQECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRHFII 141
+ G+ + +VQD IC+ NH K ++ F D + +I
Sbjct: 417 LKSSVGDLLPSDVQDKICHLLCNHFGKEDEIFEDKAKKLLI 457
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -1
Query: 723 NSPATEIRITTRCIYLKLTFNIRLVYERVQNIEDAQYVPSLILSIKSFNFSWTQ 562
NSP +T+R + L L++ R+ EDA P + F+W Q
Sbjct: 1942 NSPNITATMTSRQFQVMLDVLTNLLFARLPKYEDAVVKPPPAANTSYLKFAWAQ 1995
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,557,214
Number of Sequences: 37544
Number of extensions: 432618
Number of successful extensions: 1182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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