Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0622
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.027
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_41827| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)      29   4.1  
SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_54880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017)         28   9.5  
SB_47306| Best HMM Match : I-set (HMM E-Value=0)                       28   9.5  
SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)            28   9.5  

>SB_1938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +2

Query: 710 VAGEFGRHSLYKMLGYFS 763
           V+GEFG H LYKMLGYFS
Sbjct: 13  VSGEFGIHPLYKMLGYFS 30


>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 437

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 48  SDDYNEGGYESYGDYEAQSTEHYEPEYDRSSYYKMPDMVK 167
           S  Y+   +  YG Y+A+   +Y P   RS +    DMVK
Sbjct: 19  SSPYSSVHFPVYGQYDARQERYYGPPLPRSQHPTRQDMVK 58


>SB_41827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
 Frame = -2

Query: 155 RHFIIRRPVIFRLVVFCGLCFIVAIGFVTSL---IIIVAGIHGC 33
           ++ ++R+ ++  +++  G+ FIV  GF+ S+   IIIV  +H C
Sbjct: 610 QYIMLRQHLMVAIIIVLGITFIVIAGFLWSVWTAIIIVHSLHPC 653


>SB_34942| Best HMM Match : Ca_channel_B (HMM E-Value=2.09999e-41)
          Length = 536

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +3

Query: 42  YSSDDYNEGGYESYGDYEAQST----EHYEPEYDRSSYYKMP 155
           Y ++ Y EG Y+  GDY+  +     + Y PEYD   Y + P
Sbjct: 458 YGAEIY-EGQYQEGGDYQYNAELGYQQDYSPEYDSQQYGQEP 498


>SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1436

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 257 QECGEGILIEVQDLICYTFINHVAKVNKEFLDHV 156
           Q C E  L +++D IC  +++ V   +K F +H+
Sbjct: 605 QRCMEKCLQDIRDKICIPYLDDVLVYSKTFTEHL 638


>SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/76 (26%), Positives = 30/76 (39%)
 Frame = +2

Query: 290 EDEVSPIVDNDNVFMILYKELYYRDIYARVPGGPKPEQRFHSFYNYCDLFNYILSVTPVP 469
           ED  S I  +     +L   L   D+Y ++ G P PE R  +      +   IL   P  
Sbjct: 204 EDYFSRIEISKTFVDMLIGRLRSDDVYNQISGYPLPEHRSTALATQASMLFVILYFAPEI 263

Query: 470 LELPDQWLWELIDNLF 517
           L      + E++D  F
Sbjct: 264 LHSQQAKMREIVDKHF 279


>SB_54880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
 Frame = +2

Query: 248 HTPEKYFENTPWPDEDEVSPIVDNDNVFMILY---KELYYRDIYARVPGGPKPEQRFHSF 418
           HT  K  E  PW    EVS +     +   LY    E Y +DIY       K    F +F
Sbjct: 183 HTDNKNKEKEPWITSVEVSEVAKKLQLDFELYPVEAECYIQDIYDENSSEGKEVFTFLTF 242

Query: 419 -YNYCD 433
            + +CD
Sbjct: 243 RHLFCD 248


>SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017)
          Length = 748

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -1

Query: 105 WTVLHSRHRIRNLPHYNRRWNTWLLIESNSIHTLE 1
           W+VL  + + R LP  N+++   ++ + + IHT++
Sbjct: 537 WSVLKQKSKSRGLPSQNKKFMLSIIDDFHVIHTVQ 571


>SB_47306| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1260

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 284  PDEDEVSPIVDNDN-VFMILYKELYYRDIYARVPGGPKPE 400
            PDE  V+P+++  N V + L +E     + AR+ G PKPE
Sbjct: 1172 PDEGTVAPVIEGLNDVVVPLGREA---KLDARITGSPKPE 1208


>SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)
          Length = 854

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 182 VNKEFL-DHVRHFIIRRPVIFRLVVFCGLCFIVAIGF 75
           ++KE++ D  R F+    +   LV  CGLCF + +GF
Sbjct: 26  LSKEWVFDPFRAFLSDETIDLVLVHICGLCFDLFVGF 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,193,618
Number of Sequences: 59808
Number of extensions: 522727
Number of successful extensions: 1385
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)