Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0622
(768 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY089607-1|AAL90345.1| 539|Drosophila melanogaster RE21692p pro... 147 1e-35
AE014296-2102|AAF49952.1| 539|Drosophila melanogaster CG5642-PA... 147 1e-35
AE013599-3622|AAF47022.3| 406|Drosophila melanogaster CG33150-P... 34 0.25
AY058707-1|AAL13936.1| 703|Drosophila melanogaster LD43147p pro... 30 4.0
AF179590-1|AAD53181.1| 735|Drosophila melanogaster ubiquitin-sp... 30 4.0
AE014296-3035|AAF49249.1| 735|Drosophila melanogaster CG4166-PA... 30 4.0
X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D. m... 29 7.0
M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protei... 29 7.0
EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein ... 29 7.0
EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein ... 29 7.0
DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein ... 29 7.0
DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein ... 29 7.0
AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol pr... 29 7.0
AE014296-2059|AAF49989.1| 747|Drosophila melanogaster CG7260-PA... 29 9.3
AE014134-438|AAO41161.1| 1283|Drosophila melanogaster CG33125-PA... 29 9.3
>AY089607-1|AAL90345.1| 539|Drosophila melanogaster RE21692p
protein.
Length = 539
Score = 147 bits (357), Expect = 1e-35
Identities = 81/176 (46%), Positives = 104/176 (59%), Gaps = 3/176 (1%)
Frame = +2
Query: 245 PHTPEKYFENTPWPDEDEVSPIVDNDNVFMILYKELYYRDIYARVPGGPKPEQRFHSFYN 424
P + +F+ T WP+E EV+ IVDND VF+ILYKELYYR I+AR+PGGPK EQR +SF+N
Sbjct: 70 PQISDHHFDKTAWPEEQEVAAIVDNDKVFLILYKELYYRHIHARIPGGPKLEQRINSFFN 129
Query: 425 YCDLFNYILSV-TPVPLELPDQWLWELIDN-LFINSNLLP-STGLVPQS*VQXXXXXXXX 595
YCD FN I+S PV LELPD WLWEL+D ++ N L +S +
Sbjct: 130 YCDFFNLIISAQNPVMLELPDIWLWELVDEFVYQFQNFAQYRARLTEKSQDEIQQLCVNH 189
Query: 596 XXXXGTYCASSMFCTLS*TSLILNVSLRYMHLVVILISVAGEFGRHSLYKMLGYFS 763
C ++ +L S I L + V +VAG+FG+ S YKMLGYFS
Sbjct: 190 SNEWSILCILNVLHSLVDISNI-KKQLEAISQGVDPQTVAGDFGKLSFYKMLGYFS 244
Score = 83.0 bits (196), Expect = 4e-16
Identities = 42/66 (63%), Positives = 51/66 (77%), Gaps = 2/66 (3%)
Frame = +1
Query: 511 FVYQFQSFAQYRSRTTKLSPAEIEAL--NTENKAWNVLCILNVLHSLVDKSNIKRQLEVY 684
FVYQFQ+FAQYR+R T+ S EI+ L N N+ W++LCILNVLHSLVD SNIK+QLE
Sbjct: 160 FVYQFQNFAQYRARLTEKSQDEIQQLCVNHSNE-WSILCILNVLHSLVDISNIKKQLEAI 218
Query: 685 ASGGDP 702
+ G DP
Sbjct: 219 SQGVDP 224
Score = 61.3 bits (142), Expect = 1e-09
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 39 MYSSDDYNEGGYESYGDYEAQSTEHYEPEYDRSSYY-KMPDMVKKFLVYFRNMINEGVTY 215
MY D+Y + Y DY + EY+R+ Y +MPD VK FL+ F I EG Y
Sbjct: 1 MYGGDEYATNS-DYYDDYAHTGDPQLDMEYERNYYAARMPDNVKYFLINFCQAIKEGNLY 59
Query: 216 EILNLYENTFPTL 254
+I N+YENTFP +
Sbjct: 60 DIQNMYENTFPQI 72
>AE014296-2102|AAF49952.1| 539|Drosophila melanogaster CG5642-PA
protein.
Length = 539
Score = 147 bits (357), Expect = 1e-35
Identities = 81/176 (46%), Positives = 104/176 (59%), Gaps = 3/176 (1%)
Frame = +2
Query: 245 PHTPEKYFENTPWPDEDEVSPIVDNDNVFMILYKELYYRDIYARVPGGPKPEQRFHSFYN 424
P + +F+ T WP+E EV+ IVDND VF+ILYKELYYR I+AR+PGGPK EQR +SF+N
Sbjct: 70 PQISDHHFDKTAWPEEQEVAAIVDNDKVFLILYKELYYRHIHARIPGGPKLEQRINSFFN 129
Query: 425 YCDLFNYILSV-TPVPLELPDQWLWELIDN-LFINSNLLP-STGLVPQS*VQXXXXXXXX 595
YCD FN I+S PV LELPD WLWEL+D ++ N L +S +
Sbjct: 130 YCDFFNLIISAQNPVMLELPDIWLWELVDEFVYQFQNFAQYRARLTEKSQDEIQQLCVNH 189
Query: 596 XXXXGTYCASSMFCTLS*TSLILNVSLRYMHLVVILISVAGEFGRHSLYKMLGYFS 763
C ++ +L S I L + V +VAG+FG+ S YKMLGYFS
Sbjct: 190 SNEWSILCILNVLHSLVDISNI-KKQLEAISQGVDPQTVAGDFGKLSFYKMLGYFS 244
Score = 83.0 bits (196), Expect = 4e-16
Identities = 42/66 (63%), Positives = 51/66 (77%), Gaps = 2/66 (3%)
Frame = +1
Query: 511 FVYQFQSFAQYRSRTTKLSPAEIEAL--NTENKAWNVLCILNVLHSLVDKSNIKRQLEVY 684
FVYQFQ+FAQYR+R T+ S EI+ L N N+ W++LCILNVLHSLVD SNIK+QLE
Sbjct: 160 FVYQFQNFAQYRARLTEKSQDEIQQLCVNHSNE-WSILCILNVLHSLVDISNIKKQLEAI 218
Query: 685 ASGGDP 702
+ G DP
Sbjct: 219 SQGVDP 224
Score = 61.3 bits (142), Expect = 1e-09
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 39 MYSSDDYNEGGYESYGDYEAQSTEHYEPEYDRSSYY-KMPDMVKKFLVYFRNMINEGVTY 215
MY D+Y + Y DY + EY+R+ Y +MPD VK FL+ F I EG Y
Sbjct: 1 MYGGDEYATNS-DYYDDYAHTGDPQLDMEYERNYYAARMPDNVKYFLINFCQAIKEGNLY 59
Query: 216 EILNLYENTFPTL 254
+I N+YENTFP +
Sbjct: 60 DIQNMYENTFPQI 72
>AE013599-3622|AAF47022.3| 406|Drosophila melanogaster CG33150-PA
protein.
Length = 406
Score = 33.9 bits (74), Expect = 0.25
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = -2
Query: 233 IEVQDLICYTFINHVAKVNKEFLDHVRHFIIRRPVIFRLVVFCGLCFIVAIGFVTSLIII 54
I+ + C T ++ V+ K+ D + HFII+ R V CG+ + + F+T+L++
Sbjct: 318 IQNEHSTCLTLLSRVSYARKDIQDTITHFIIQMRTNVRQHVVCGV-INLDLKFLTTLLVA 376
Query: 53 VA 48
A
Sbjct: 377 SA 378
>AY058707-1|AAL13936.1| 703|Drosophila melanogaster LD43147p
protein.
Length = 703
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 748 HFVQRMTTKLASHRNQDHHQMHIPQADV*Y*TCLRESAEH 629
H + LA + QD H+ I DV + C++ AEH
Sbjct: 435 HLIWNHAKHLAGYEQQDAHEFFIATLDVLHRHCVKAKAEH 474
>AF179590-1|AAD53181.1| 735|Drosophila melanogaster
ubiquitin-specific protease nonstopprotein.
Length = 735
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 748 HFVQRMTTKLASHRNQDHHQMHIPQADV*Y*TCLRESAEH 629
H + LA + QD H+ I DV + C++ AEH
Sbjct: 467 HLIWNHAKHLAGYEQQDAHEFFIATLDVLHRHCVKAKAEH 506
>AE014296-3035|AAF49249.1| 735|Drosophila melanogaster CG4166-PA
protein.
Length = 735
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 748 HFVQRMTTKLASHRNQDHHQMHIPQADV*Y*TCLRESAEH 629
H + LA + QD H+ I DV + C++ AEH
Sbjct: 467 HLIWNHAKHLAGYEQQDAHEFFIATLDVLHRHCVKAKAEH 506
>X03734-1|CAA27371.1| 930|Drosophila melanogaster protein ( D.
melanogaster retrotransposongypsy gene fragment for
reverse transcriptase-like enzyme.).
Length = 930
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 266 SISQECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRH 150
SI Q + +L E ICY +++ V ++ DHVRH
Sbjct: 298 SIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRH 336
>M12927-2|AAA70219.1| 1010|Drosophila melanogaster unknown protein
protein.
Length = 1010
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 266 SISQECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRH 150
SI Q + +L E ICY +++ V ++ DHVRH
Sbjct: 293 SIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRH 331
>EF591043-2|ABQ84946.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 266 SISQECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRH 150
SI Q + +L E ICY +++ V ++ DHVRH
Sbjct: 328 SIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRH 366
>EF591042-2|ABQ84943.1| 1045|Drosophila melanogaster pol protein
protein.
Length = 1045
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 266 SISQECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRH 150
SI Q + +L E ICY +++ V ++ DHVRH
Sbjct: 328 SIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRH 366
>DQ887187-2|ABI48306.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 266 SISQECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRH 150
SI Q + +L E ICY +++ V ++ DHVRH
Sbjct: 293 SIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRH 331
>DQ887186-2|ABI48303.1| 1010|Drosophila melanogaster pol protein
protein.
Length = 1010
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 266 SISQECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRH 150
SI Q + +L E ICY +++ V ++ DHVRH
Sbjct: 293 SIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRH 331
>AF033821-2|AAC82604.1| 1463|Drosophila melanogaster Prgag-pol
protein.
Length = 1463
Score = 29.1 bits (62), Expect = 7.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 266 SISQECGEGILIEVQDLICYTFINHVAKVNKEFLDHVRH 150
SI Q + +L E ICY +++ V ++ DHVRH
Sbjct: 746 SIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRH 784
>AE014296-2059|AAF49989.1| 747|Drosophila melanogaster CG7260-PA
protein.
Length = 747
Score = 28.7 bits (61), Expect = 9.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 42 YSSDDYNEGGYESYGDYEAQSTEHYEPEY 128
YS+ ++ G YG Y+ + +Y+PEY
Sbjct: 613 YSASGWHNGSGAEYGLYQNAAAAYYQPEY 641
>AE014134-438|AAO41161.1| 1283|Drosophila melanogaster CG33125-PA
protein.
Length = 1283
Score = 28.7 bits (61), Expect = 9.3
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +3
Query: 33 TTMYSSDDYNEG---GYESYGDY-EAQSTEHYEPEYDRSSYYKMPD 158
+T Y SD+ +G Y+ Y DY E + E Y+ Y+ Y+ PD
Sbjct: 301 STEYGSDNDYDGYPENYKKYRDYYEEPTAEAYQNPYEEFHDYEYPD 346
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,966,125
Number of Sequences: 53049
Number of extensions: 781511
Number of successful extensions: 2405
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2397
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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