Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0622
(768 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28739-15|AAK68188.1| 537|Caenorhabditis elegans Hypothetical p... 97 9e-21
U28739-14|AAM54207.1| 535|Caenorhabditis elegans Hypothetical p... 97 9e-21
AF016674-3|AAB66128.1| 558|Caenorhabditis elegans Hypothetical ... 43 2e-04
Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical pr... 30 1.6
AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical... 29 2.8
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 29 3.6
U97403-9|AAB52469.1| 389|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical pr... 29 4.8
AL132847-2|CAB63372.1| 343|Caenorhabditis elegans Hypothetical ... 28 6.4
U80028-8|AAN73866.1| 378|Caenorhabditis elegans Serpentine rece... 28 8.4
>U28739-15|AAK68188.1| 537|Caenorhabditis elegans Hypothetical
protein C17G10.9a protein.
Length = 537
Score = 97.5 bits (232), Expect = 9e-21
Identities = 63/179 (35%), Positives = 89/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 245 PHTPEKYFENTPWPDEDEVSPIVDNDN-VFMILYKELYYRDIYARVPGGPKPEQRFHSFY 421
P E++F + WPDE+ V I+ N +F+ILYKELYYR +YAR GP R+ SF
Sbjct: 64 PDLTERFFRDRMWPDENVVERIIGPGNKLFIILYKELYYRQLYARNTRGPLLVHRYESFM 123
Query: 422 NYCDLFNYIL-SVTPVPLELPDQWLWELIDNLFINSNLL----PSTGLVPQS*VQXXXXX 586
NY +LF+ +L S P+PL LP+ WLW++ID + G V+
Sbjct: 124 NYQELFSELLSSKDPIPLSLPNVWLWDIIDEFVYQFQAFCLYKANPGKRNADEVEDLINI 183
Query: 587 XXXXXXXGTYCASSMFCTLS*TSLILNVSLRYMHLVVILISVAGEFGRHSLYKMLGYFS 763
Y ++ +L S I+ L+ + SVA EFG+ LY LGYF+
Sbjct: 184 EENQNAWNIYPVLNILYSLLSKSQIVE-QLKALKEKRNPDSVADEFGQSDLYFKLGYFA 241
Score = 55.2 bits (127), Expect = 5e-08
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = +1
Query: 511 FVYQFQSFAQYRSRTTKLSPAEIEAL-NTENK--AWNVLCILNVLHSLVDKSNIKRQLEV 681
FVYQFQ+F Y++ K + E+E L N E AWN+ +LN+L+SL+ KS I QL+
Sbjct: 155 FVYQFQAFCLYKANPGKRNADEVEDLINIEENQNAWNIYPVLNILYSLLSKSQIVEQLKA 214
Query: 682 YASGGDPD 705
+PD
Sbjct: 215 LKEKRNPD 222
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 150 MPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTL 254
+P+ V +LVYF M++E EIL LY+ FP L
Sbjct: 32 VPNEVADYLVYFSRMVDEQNVPEILTLYDQAFPDL 66
>U28739-14|AAM54207.1| 535|Caenorhabditis elegans Hypothetical
protein C17G10.9b protein.
Length = 535
Score = 97.5 bits (232), Expect = 9e-21
Identities = 63/179 (35%), Positives = 89/179 (49%), Gaps = 6/179 (3%)
Frame = +2
Query: 245 PHTPEKYFENTPWPDEDEVSPIVDNDN-VFMILYKELYYRDIYARVPGGPKPEQRFHSFY 421
P E++F + WPDE+ V I+ N +F+ILYKELYYR +YAR GP R+ SF
Sbjct: 62 PDLTERFFRDRMWPDENVVERIIGPGNKLFIILYKELYYRQLYARNTRGPLLVHRYESFM 121
Query: 422 NYCDLFNYIL-SVTPVPLELPDQWLWELIDNLFINSNLL----PSTGLVPQS*VQXXXXX 586
NY +LF+ +L S P+PL LP+ WLW++ID + G V+
Sbjct: 122 NYQELFSELLSSKDPIPLSLPNVWLWDIIDEFVYQFQAFCLYKANPGKRNADEVEDLINI 181
Query: 587 XXXXXXXGTYCASSMFCTLS*TSLILNVSLRYMHLVVILISVAGEFGRHSLYKMLGYFS 763
Y ++ +L S I+ L+ + SVA EFG+ LY LGYF+
Sbjct: 182 EENQNAWNIYPVLNILYSLLSKSQIVE-QLKALKEKRNPDSVADEFGQSDLYFKLGYFA 239
Score = 55.2 bits (127), Expect = 5e-08
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = +1
Query: 511 FVYQFQSFAQYRSRTTKLSPAEIEAL-NTENK--AWNVLCILNVLHSLVDKSNIKRQLEV 681
FVYQFQ+F Y++ K + E+E L N E AWN+ +LN+L+SL+ KS I QL+
Sbjct: 153 FVYQFQAFCLYKANPGKRNADEVEDLINIEENQNAWNIYPVLNILYSLLSKSQIVEQLKA 212
Query: 682 YASGGDPD 705
+PD
Sbjct: 213 LKEKRNPD 220
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 150 MPDMVKKFLVYFRNMINEGVTYEILNLYENTFPTL 254
+P+ V +LVYF M++E EIL LY+ FP L
Sbjct: 30 VPNEVADYLVYFSRMVDEQNVPEILTLYDQAFPDL 64
>AF016674-3|AAB66128.1| 558|Caenorhabditis elegans Hypothetical
protein C03H5.5 protein.
Length = 558
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 281 WPDEDEVSPIVDNDNV-FMILYKELYYRDIYARVPGGPKPEQRFHSFYNYCDLFNYILSV 457
WPDE V + +N FM+LYKEL YR + A + Q NY +F S+
Sbjct: 138 WPDEITVRKSISPENQDFMVLYKELKYRRLNA------EARQNKDMLENYQSIF----SI 187
Query: 458 TPVPLELPDQWLWELID 508
P L LPD W+ ++++
Sbjct: 188 LPGKLNLPDYWILDIME 204
>Z75711-8|CAJ43907.1| 118|Caenorhabditis elegans Hypothetical
protein K02B12.9 protein.
Length = 118
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 72 YESYGDYEAQSTEHYEPEYDRSSY 143
YESYG Y+ HY+P Y SY
Sbjct: 43 YESYGKYDDHKDSHYQPSYYHDSY 66
>Z81039-5|CAB02770.1| 812|Caenorhabditis elegans Hypothetical
protein C25D7.6 protein.
Length = 812
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/86 (25%), Positives = 41/86 (47%)
Frame = -1
Query: 762 EKYPSILYKE*RPNSPATEIRITTRCIYLKLTFNIRLVYERVQNIEDAQYVPSLILSIKS 583
+K S +Y+E + + +I T K R V ++ + E +Y+ + I+S
Sbjct: 538 KKASSSIYEENTQWAGIQDTKILTMDFMRKYIHLARSVQPKLTD-EATEYISEVYADIRS 596
Query: 582 FNFSWTQLCGTRPVLGKRLELINKLS 505
F+ + T T PV ++LE + +LS
Sbjct: 597 FDITKTDQERTMPVTARQLETLIRLS 622
>AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical
protein Y105C5A.24 protein.
Length = 478
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -2
Query: 305 VRPHLHLAKVYFQSISQECGEGILIEVQDLICYTFINHVAKVNKEFLDHV 156
+R H+++ K+Y S G+G+++E D C + + K + +DHV
Sbjct: 96 LRNHVNIIKIYGMYESHRNGQGLVMEYMDCGCVADLIYDRKNIEYKMDHV 145
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical protein
W05B2.2 protein.
Length = 1278
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -2
Query: 371 HRC--HGSIVLCIGS*IHYHCPQ*VRPHLHLAKVYFQSISQECGEGILIEVQDLIC 210
H+C GS+ +C G I CP V P + + K EC + +++ C
Sbjct: 971 HKCTAQGSVSICCGLEIQDICPTRVYPSIRVQKCSMCGAGYECHKNYCCPQKEVAC 1026
>U97403-9|AAB52469.1| 389|Caenorhabditis elegans Hypothetical
protein T10E9.1 protein.
Length = 389
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 24 ILLTTMYSSDDYNEGGYESYGDYEAQSTEHYEPEYDRSSY 143
ILL + +DD +E ++Y DY+ +++P+YD Y
Sbjct: 330 ILLGLPHFADDSSEYD-DNYDDYDNDEDSNFDPDYDYERY 368
>Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical
protein B0393.4 protein.
Length = 803
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -3
Query: 697 HHQMHIPQADV*Y*TCLRESAEH*GCTVRSKPYSQY 590
HHQ H PQ + + C+R+ +V PY+++
Sbjct: 246 HHQQHQPQEPMSFAACVRKQPSIESMSVSPSPYAKF 281
>AL132847-2|CAB63372.1| 343|Caenorhabditis elegans Hypothetical
protein Y48G10A.3 protein.
Length = 343
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 111 HYEPEYDRSSYYKMPDMVKKFLVYFRNMINEGVTYEILNLYENTFP 248
H+ YDR S PD+V+++ V+F+++ N E + Y P
Sbjct: 195 HFGRNYDRCS----PDIVRQYRVFFQHLPNPNSLAEFIESYIQRTP 236
>U80028-8|AAN73866.1| 378|Caenorhabditis elegans Serpentine
receptor, class w protein118 protein.
Length = 378
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 90 SRHRIRNLPHYNRRWNTWLLIESNSIHTL 4
+RH + L Y+RR +TWL++ I TL
Sbjct: 113 NRHLLHLLKDYSRRCSTWLMVFIALIRTL 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,931,489
Number of Sequences: 27780
Number of extensions: 390813
Number of successful extensions: 1153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -