Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0622
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.5  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   9.5  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   9.5  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   9.5  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   9.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 631  VLHSLVDKSNIKRQLEVYASGGD 699
            +LH L   +N   Q+  + SGGD
Sbjct: 1142 ILHGLKKYTNYSMQVLAFTSGGD 1164


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 339 YTKNYTTVTSMQESLED 389
           YTK+  TV  M E++ED
Sbjct: 442 YTKDSYTVAGMGETIED 458


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 339 YTKNYTTVTSMQESLEDQN 395
           Y KNYT   S ++ L  QN
Sbjct: 446 YNKNYTKFCSTEKRLTKQN 464


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 389 PKPEQRFHSFYNYCDLFNYILSVTPVPLELP 481
           P+P   F S       F YI   TP P  +P
Sbjct: 126 PRPMGPFVSMQEQIPRFRYIGPPTPFPRFIP 156


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 389 PKPEQRFHSFYNYCDLFNYILSVTPVPLELP 481
           P+P   F S       F YI   TP P  +P
Sbjct: 126 PRPMGPFVSMQEQIPRFRYIGPPTPFPRFIP 156


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 389 PKPEQRFHSFYNYCDLFNYILSVTPVPLELP 481
           P+P   F S       F YI   TP P  +P
Sbjct: 126 PRPMGPFVSMQEQIPRFRYIGPPTPFPRFIP 156


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 389 PKPEQRFHSFYNYCDLFNYILSVTPVPLELP 481
           P+P   F S       F YI   TP P  +P
Sbjct: 126 PRPMGPFVSMQEQIPRFRYIGPPTPFPRFIP 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,735
Number of Sequences: 438
Number of extensions: 5137
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)