Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0621
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       34   0.001
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +3

Query: 414 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEKH*HS*YRXXXXXXXXXXXQEMVLE 593
           IK  G+   T +Q  A+P ++ GRDL+  A+T   K   + +             ++V+ 
Sbjct: 211 IKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGK--TAAFAVPIINTLLERSVDLVVT 268

Query: 594 SSFCHPQ 614
           S++C PQ
Sbjct: 269 STYCEPQ 275



 Score = 25.8 bits (54), Expect = 0.42
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +2

Query: 593 VIILSPTRELSMQTFGVLMELMKYHHHTY--GLVMGGATEVLKLRNSL 730
           V+I+SPTREL++Q   +  +++K+  ++    +V  G T V+  R  L
Sbjct: 276 VVIVSPTRELTIQ---IWQQIVKFSLNSILKTVVAYGGTSVMHQRGKL 320


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -1

Query: 702 VAPPITRPYVWWWYFINSMRTPNVC 628
           + PPI  P+ +       MRT  VC
Sbjct: 608 IVPPIIEPFTFQEGLSEGMRTRTVC 632


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 76  QKTDSNPEPEKDIEALNNEKEAK--KRVVQDGDTN 174
           +K + NP+P+  + ALN  K     K V Q G T+
Sbjct: 26  KKRNKNPQPKNAVCALNELKSGAVYKVVDQTGPTH 60


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 418 LIPKRVGSHTVPSSAVNF*SDSIP 347
           L+P+ +  HT P S +   + ++P
Sbjct: 653 LLPRPISCHTTPDSFIEAPNKTLP 676


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 302 GKKIEQRFTWIKPLLRYTIRSKIHCT 379
           GKKI   F  ++PL+ +   S ++ T
Sbjct: 240 GKKITHFFDLVRPLIAFKFHSILNRT 265


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/31 (25%), Positives = 13/31 (41%)
 Frame = -1

Query: 669 WWYFINSMRTPNVCIDNSLVGDKMMTPVPFL 577
           WW    ++ TP +C+           PV +L
Sbjct: 490 WWKICWTITTPAICVGVFTFNIIKFVPVKYL 520


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/31 (25%), Positives = 13/31 (41%)
 Frame = -1

Query: 669 WWYFINSMRTPNVCIDNSLVGDKMMTPVPFL 577
           WW    ++ TP +C+           PV +L
Sbjct: 543 WWKICWTITTPAICVGVFTFNIIKFVPVKYL 573


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 664 PPPYIWSGNG 693
           PPP +W  NG
Sbjct: 339 PPPLVWRRNG 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,597
Number of Sequences: 438
Number of extensions: 3060
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)