Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0621
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 92 3e-19
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 84 1e-16
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 71 8e-13
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 44 8e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 44 8e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 44 1e-04
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 44 1e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 43 2e-04
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 41 7e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 40 0.002
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 40 0.002
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 39 0.004
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 38 0.009
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 38 0.009
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 38 0.009
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 37 0.012
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 37 0.012
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 37 0.012
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 37 0.016
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 37 0.016
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 37 0.016
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 36 0.021
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 36 0.021
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 36 0.028
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 36 0.037
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 36 0.037
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 35 0.049
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 35 0.049
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 35 0.065
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 35 0.065
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 34 0.086
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 34 0.11
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 34 0.11
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 33 0.15
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 33 0.15
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 33 0.15
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 33 0.15
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 33 0.15
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 33 0.15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 33 0.26
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 31 0.80
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 31 1.1
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 31 1.1
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 30 1.4
At3g50690.1 68416.m05546 leucine-rich repeat family protein 30 1.8
At3g01080.1 68416.m00011 WRKY family transcription factor simila... 29 2.4
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00... 29 3.2
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 29 3.2
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 29 3.2
At3g43530.1 68416.m04621 hypothetical protein contains Pfam prof... 29 4.3
At3g13700.1 68416.m01731 RNA-binding protein, putative similar t... 29 4.3
At3g11070.1 68416.m01337 outer membrane OMP85 family protein con... 29 4.3
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 29 4.3
At5g50310.1 68418.m06229 kelch repeat-containing protein similar... 28 5.6
At2g11910.2 68415.m01278 expressed protein 28 5.6
At2g11910.1 68415.m01277 expressed protein 28 5.6
At1g25400.1 68414.m03153 expressed protein similar to unknown pr... 28 5.6
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 28 5.6
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 28 7.4
At1g63980.1 68414.m07247 D111/G-patch domain-containing protein ... 28 7.4
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 92.3 bits (219), Expect = 3e-19
Identities = 38/60 (63%), Positives = 52/60 (86%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGG 697
KTLAFLIPA++L+Y++KF PRNGTGV+++ PTREL++Q++GV EL+KYH T G V+GG
Sbjct: 204 KTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGG 263
Score = 58.8 bits (136), Expect = 3e-09
Identities = 33/90 (36%), Positives = 54/90 (60%)
Frame = +3
Query: 252 RSSDDSQDEQDTKEDDSEKKSNNDLPGSSLCLGILSDQKFTALEGTVCEPTLLGIKDMGF 431
R +++ E++ ED E+K + I++++ F +L ++ + T IK+MGF
Sbjct: 124 RKDTEAKSEEEEVEDKEEEKKLEET-------SIMTNKTFESL--SLSDNTYKSIKEMGF 174
Query: 432 ITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
MT+IQAKAIPPL+ G D++GAA+T K
Sbjct: 175 ARMTQIQAKAIPPLMMGEDVLGAARTGSGK 204
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/60 (60%), Positives = 49/60 (81%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGG 697
KTLAFLIPA++L++K +F PRNGTGVI++ PTREL++QT V EL+K+H T +V+GG
Sbjct: 139 KTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGG 198
Score = 58.8 bits (136), Expect = 3e-09
Identities = 34/90 (37%), Positives = 55/90 (61%)
Frame = +3
Query: 252 RSSDDSQDEQDTKEDDSEKKSNNDLPGSSLCLGILSDQKFTALEGTVCEPTLLGIKDMGF 431
R + ++E+ +D E + N + G GI+++ F +L+ + E T + IK+MGF
Sbjct: 56 RGKIEEEEEKVEAMEDGEDEKNIVIVGK----GIMTNVTFDSLD--LSEQTSIAIKEMGF 109
Query: 432 ITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
MT+IQA +I PLLEG+D++GAA+T K
Sbjct: 110 QYMTQIQAGSIQPLLEGKDVLGAARTGSGK 139
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 70.9 bits (166), Expect = 8e-13
Identities = 30/60 (50%), Positives = 47/60 (78%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGG 697
KTLAF+IP ++ +++ ++ P +G G II+SPTREL+ QTFGVL ++ K+H + GL++GG
Sbjct: 121 KTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGG 180
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = +3
Query: 363 QKFTALEGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+KF L + + T G+KD ++ MT++Q+ AIP L GRD++GAA+T K
Sbjct: 71 RKFAQLP--ISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGK 121
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 44.4 bits (100), Expect = 8e-05
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +3
Query: 261 DDSQDEQDTKEDDSEKKSNNDLPGSSLCLGILSDQKFTALEGTVCEP-TLLGIKDMGFIT 437
DD DE K+ S K D P S T + P +L IKD GF T
Sbjct: 345 DDENDEPLIKKAASAKAVQTDKPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFET 404
Query: 438 MTEIQAKAIPPLLEGRDLVGAAKTALEK 521
MT +Q +P +L+G+D++ AKT K
Sbjct: 405 MTVVQEATLPIILQGKDVLAKAKTGTGK 432
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTG----VIILSPTRELSMQTFGVLMELMKYHHHTYGL 685
KT+AFL+PAI+ + K R+ V+++ PTREL+ Q L+KYH
Sbjct: 432 KTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQ 491
Query: 686 VMGGATEV 709
V+ G T++
Sbjct: 492 VVIGGTKL 499
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRN--GTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVM 691
KT AF +P ++ +L F+P+ T V+IL+PTREL++Q ++ L ++ GL++
Sbjct: 217 KTAAFALPTLE---RLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIV 273
Query: 692 GG 697
GG
Sbjct: 274 GG 275
Score = 35.9 bits (79), Expect = 0.028
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +3
Query: 264 DSQDEQDTKEDDSEKKSNNDL---PGSSLCLGILSDQKFTALEGTVCEPTLLGIKDMGFI 434
D Q+E +++D++ + D P S G+ S T +E + P L + +G+
Sbjct: 130 DKQEEYLSEDDEAAEYKPEDATPKPFFSTVDGV-SFHADTFMELNLSRPLLRACETLGYK 188
Query: 435 TMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
T IQA IP L GRDL +A T K
Sbjct: 189 KPTPIQAACIPLALTGRDLCASAITGSGK 217
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLK-FKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMG 694
KT AFLIP ++ KLK P+ G +ILSPTR+L+ QT EL K+ L++G
Sbjct: 78 KTAAFLIPMLE---KLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVG 134
Query: 695 G 697
G
Sbjct: 135 G 135
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Frame = +2
Query: 518 KTLAFLIPAIDLI--YKLKFKPRNGTGVIILSPTRELSMQTFGVLMELM-KYHHHTYGLV 688
KT+A+L P I + + K +GT +++ PTREL +Q + L +L+ ++H G V
Sbjct: 80 KTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYV 139
Query: 689 MGG---ATEVLKLRNSLKV 736
MGG A E +LR + +
Sbjct: 140 MGGEKKAKEKARLRKGISI 158
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 423 MGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
MGF T +QA+AIP +L GRD++ A T K
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGK 80
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +3
Query: 402 TLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
TL GI+D GF TMT +Q +P +L+G+D++ AKT K
Sbjct: 91 TLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGK 130
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTG----VIILSPTRELSMQTFGVLMELMKYHHHTYGL 685
KT+AFL+P+I+ + K R+ V+++ PTREL+ Q L+KYH
Sbjct: 130 KTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQ 189
Query: 686 VMGGATEV 709
V+ G T++
Sbjct: 190 VVIGGTKL 197
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTGVIILSPTRELSMQ 631
KTL +LIPA L+ + RNG V+IL+PTREL+ Q
Sbjct: 485 KTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQ 522
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 369 FTALEGTVCEPTLLG-IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+ E + P +L + GF + T IQA+ P L+ RD+V AKT K
Sbjct: 434 YITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGK 485
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYK-LKF--KPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLV 688
KTLAF++P ++++ + F KP GVII SPTRELS Q + V + + ++
Sbjct: 66 KTLAFVVPLVEILRRSTSFPPKPHQVMGVII-SPTRELSTQIYNVAQPFVSTLANVNSVL 124
Query: 689 MGGATEV 709
+ G EV
Sbjct: 125 LVGGREV 131
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 39.5 bits (88), Expect = 0.002
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKF---KPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLV 688
KTLAFL+P I++I + KP GVII SPTRELS Q V + + ++
Sbjct: 66 KTLAFLLPFIEIIRRSNSYPPKPHQVMGVII-SPTRELSAQIHKVAEPFVSTLPNVNSVL 124
Query: 689 MGGATEVLKLRNSLK 733
+ G EV N+L+
Sbjct: 125 LVGGREVEADMNTLE 139
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +3
Query: 402 TLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+L IKD G+ TMT +Q +P +L+G+D++ AKT K
Sbjct: 65 SLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGK 104
Score = 35.1 bits (77), Expect = 0.049
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLK-FKPRNGTGVI---ILSPTRELSMQTFGVLMELMKYHHHTYGL 685
KT+AFL+P+I+++ K P N I ++ PTREL+ Q L+KYH
Sbjct: 104 KTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQ 163
Query: 686 VMGGATEV 709
V+ G T +
Sbjct: 164 VVIGGTRL 171
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGG 697
KTL +LIP + +++ R G +++LSPTREL+ Q ++ + + + GG
Sbjct: 208 KTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGG 267
Query: 698 ATEVLKLRN 724
A + +LR+
Sbjct: 268 APKGPQLRD 276
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 375 ALEGTVCEPTLLG-IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+ E T P LL + GF T IQA++ P ++GRD+V AKT K
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGK 208
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGG 697
KTL +LIP + +++ R G +++LSPTREL+ Q ++ + + + GG
Sbjct: 208 KTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGG 267
Query: 698 ATEVLKLRN 724
A + +LR+
Sbjct: 268 APKGPQLRD 276
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 375 ALEGTVCEPTLLG-IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+ E T P LL + GF T IQA++ P ++GRD+V AKT K
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGK 208
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGG 697
KTL +LIP + +++ R G +++LSPTREL+ Q ++ + + + GG
Sbjct: 208 KTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGG 267
Query: 698 ATEVLKLRN 724
A + +LR+
Sbjct: 268 APKGPQLRD 276
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 375 ALEGTVCEPTLLG-IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+ E T P LL + GF T IQA++ P ++GRD+V AKT K
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGK 208
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 37.1 bits (82), Expect = 0.012
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGT-GVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMG 694
KT AF IP ++ K P N +IL PTREL++QT V EL KY + + G
Sbjct: 174 KTGAFCIPVLE-----KIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTG 228
Query: 695 GAT 703
G +
Sbjct: 229 GTS 231
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 37.1 bits (82), Expect = 0.012
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGT-GVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMG 694
KT AF IP ++ K P N +IL PTREL++QT V EL KY + + G
Sbjct: 174 KTGAFCIPVLE-----KIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTG 228
Query: 695 GAT 703
G +
Sbjct: 229 GTS 231
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 37.1 bits (82), Expect = 0.012
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGT-GVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMG 694
KT AF IP ++ K P N +IL PTREL++QT V EL KY + G
Sbjct: 204 KTGAFCIPTLE-----KIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTG 258
Query: 695 GAT 703
G +
Sbjct: 259 GTS 261
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGG 697
KTL +LIP + ++ R G +++LSPTREL+ Q ++ K + + GG
Sbjct: 279 KTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGG 338
Query: 698 ATEVLKLR 721
A + +L+
Sbjct: 339 APKGPQLK 346
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 426 GFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
GF + IQA++ P ++ RD+V AKT K
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGK 279
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 36.7 bits (81), Expect = 0.016
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYK------LKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTY 679
KTLA+L+P + L+ + K KPR ++L PTRELS Q + V + +H
Sbjct: 162 KTLAYLLPIVQLMREDEANLGKKTKPRRPR-TVVLCPTRELSEQVYRVAKSI-SHHARFR 219
Query: 680 GLVMGGATEVLKLRNSL 730
+++ G + + +SL
Sbjct: 220 SILVSGGSRIRPQEDSL 236
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 36.7 bits (81), Expect = 0.016
Identities = 23/41 (56%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKF---KPRNGTGVIILSPTRELSMQ 631
KTLAFL+P I++I + KP GVII SPTRELS Q
Sbjct: 67 KTLAFLLPFIEIIRRSNSYPPKPHQVMGVII-SPTRELSAQ 106
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 36.3 bits (80), Expect = 0.021
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 399 PTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
P L +KD G + T IQ + +P +L GRD++G A T K
Sbjct: 107 PLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGK 147
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYK----LKFKPRNGTGVIILSPTRELSMQTFGVLMELM 658
KTL F++P I L + + G +++ P+REL+ QT+ V+ + +
Sbjct: 147 KTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFV 197
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +3
Query: 396 EPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+ L G+ D G+ +EIQ +A+ P+L+GRD++ A++ K
Sbjct: 31 DKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGK 72
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 381 EGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+G V E L ++++GF+ T+IQ +A+P L GRD + A+T K
Sbjct: 80 QGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGK 126
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 35.5 bits (78), Expect = 0.037
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTG----VIILSPTRELSMQ 631
KTLAF IP ID I +KF ++G G ++L+PTREL+ Q
Sbjct: 166 KTLAFGIPIIDKI--IKFNAKHGRGKNPQCLVLAPTRELARQ 205
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 414 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+K G + IQ + P +EGRD++G A+T K
Sbjct: 131 LKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGK 166
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 396 EPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
E L G+ + GF + IQ +A+ P+L+GRD++ A++ K
Sbjct: 44 EDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGK 85
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +3
Query: 405 LLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
L I +GF T IQA+ P L+GRDL+G A+T K
Sbjct: 177 LEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGK 215
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +2
Query: 518 KTLAFLIPA-IDLIYKLKFKPRNGTGVIILSPTRELSMQ 631
KTLA+L+PA + + + + +G V+IL+PTREL++Q
Sbjct: 215 KTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQ 253
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +3
Query: 405 LLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
L I +GF T IQA+ P L+GRDL+G A+T K
Sbjct: 177 LEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGK 215
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +2
Query: 518 KTLAFLIPA-IDLIYKLKFKPRNGTGVIILSPTRELSMQ 631
KTLA+L+PA + + + + +G V+IL+PTREL++Q
Sbjct: 215 KTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQ 253
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 34.7 bits (76), Expect = 0.065
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTG--VIILSPTRELSMQ 631
KTLAF IP ID I K K G ++L+PTREL+ Q
Sbjct: 154 KTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQ 193
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 414 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+ G + IQ + P +EGRD++G A+T K
Sbjct: 119 LSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGK 154
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 34.7 bits (76), Expect = 0.065
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 408 LGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
L I+ ++ T +Q AIP LLEGRDL+ A+T K
Sbjct: 172 LNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGK 209
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKF--KPRNGTGV----IILSPTRELSMQ 631
KT AF P I I K + +PR V +ILSPTREL+ Q
Sbjct: 209 KTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQ 252
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 34.3 bits (75), Expect = 0.086
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 414 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
IK + T IQ +A+P +L GRD++G AKT K
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGK 278
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 518 KTLAFLIPAI-DLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMG 694
KT AF++P I ++ + + + G +I +PTREL+ Q F + K + V G
Sbjct: 278 KTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYG 337
Query: 695 GATE 706
G ++
Sbjct: 338 GMSK 341
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTGVIILSPTRELSMQT 634
KT AF+ P ++ KLK +G +ILSP REL+ QT
Sbjct: 191 KTFAFICP---MLIKLKRPSTDGIRAVILSPARELAAQT 226
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 393 CEPTLL-GIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
CE +L + ++GF T IQ +AIP LL GR+ A T K
Sbjct: 148 CEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGK 191
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTGVI-----ILSPTRELSMQTFGVLME 652
KTLAF IPAI + K K G+ + +LSPTREL++Q VL E
Sbjct: 164 KTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLRE 213
Score = 30.7 bits (66), Expect = 1.1
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Frame = +3
Query: 252 RSSDDSQDEQDTKEDDSEKKSN-NDL-PGSSLCLGIL------SDQKFTALEGTVCEPTL 407
R ++ + E++ K+D EKK DL G S ++ + K+ AL+ T E L
Sbjct: 65 RKREEKESEKNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALK-TFAESNL 123
Query: 408 L-GIKDM--GFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+ D F + IQ+ P LL+GRDL+G AKT K
Sbjct: 124 PENVLDCCKTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGK 164
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/85 (25%), Positives = 35/85 (41%)
Frame = +3
Query: 267 SQDEQDTKEDDSEKKSNNDLPGSSLCLGILSDQKFTALEGTVCEPTLLGIKDMGFITMTE 446
S++E + K D S +K + + D + + P +K G +
Sbjct: 62 SEEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKFRISAPLREKLKANGIEALFP 121
Query: 447 IQAKAIPPLLEGRDLVGAAKTALEK 521
IQA +L+G DLVG A+T K
Sbjct: 122 IQASTFDMVLDGADLVGRARTGQGK 146
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 372 TALEGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
T E V E + + +G+ ++IQA+A+P LEG+D++G A+T K
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGK 59
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGG 697
KT AF IP ++ I + N +I+ PTREL++QT V EL K+ + GG
Sbjct: 181 KTAAFCIPVLEKIDQ----DNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGG 236
Query: 698 AT 703
+
Sbjct: 237 TS 238
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 405 LLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
L+GI + GF + IQ ++IP L GRD++ AK K
Sbjct: 143 LMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHHTYGLVMGG 697
KT AF IP ++ I + N +I+ PTREL++QT V EL K+ + GG
Sbjct: 181 KTAAFCIPVLEKIDQ----DNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGG 236
Query: 698 AT 703
+
Sbjct: 237 TS 238
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 405 LLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
L+GI + GF + IQ ++IP L GRD++ AK K
Sbjct: 143 LMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTGV-----IILSPTRELSMQTFGVLMELMKYH 667
K++AFL+PAI+ + K + V +IL PTREL+ Q L+K+H
Sbjct: 378 KSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFH 432
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +3
Query: 273 DEQDTKEDDSEKKSNNDLPGSSLCL--GILSDQKFTALEGTVCEPTLLGIKDMGFITMTE 446
D +ED S++KS +++ I S ++F E + TL + G + MT
Sbjct: 296 DINTVREDLSKRKSVDNVMEEKQEPHDSIYSAKRFD--ESCISPLTLKALSASGILKMTR 353
Query: 447 IQAKAIPPLLEGRDLVGAAKTALEK 521
+Q + L+G+D + AKT K
Sbjct: 354 VQDATLSECLDGKDALVKAKTGTGK 378
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 414 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+K GF T IQ++ P ++GRDL+G A+T K
Sbjct: 114 VKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGK 149
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPR-NGTGVIILSPTRELSMQ 631
KTL++L+PAI + +G V++L+PTREL++Q
Sbjct: 149 KTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQ 187
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 414 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+K + + IQA+A+P ++ GRD +G AKT K
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGK 446
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRN-----GTGVIILSPTRELSMQTFGVLMELMKYH 667
K++AFL+PAI+ + K + V+IL PTREL+ Q L+K H
Sbjct: 425 KSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNH 479
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 381 EGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
E + TL + G + MT +Q + L+G+D + AKT K
Sbjct: 379 ESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGK 425
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 441 TEIQAKAIPPLLEGRDLVGAAKTALEK 521
T IQ AIP +LEG+D+V AKT K
Sbjct: 70 TLIQQSAIPYILEGKDVVARAKTGSGK 96
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 414 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
+K + + IQ +A+P ++ GRD +G AKT K
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGK 579
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 408 LGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
L I+ ++ T +Q AIP L GRDL+ A+T K
Sbjct: 159 LNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGK 196
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKF--KPRNGTGV----IILSPTRELSMQ 631
KT AF P I I K + +PR GV +ILSPTREL+ Q
Sbjct: 196 KTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQ 239
>At3g50690.1 68416.m05546 leucine-rich repeat family protein
Length = 447
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 258 SDDSQDEQDTKEDDSEKKSNNDLPGS 335
SDD DE+D ++++ E++ + + PGS
Sbjct: 164 SDDEDDEEDEEDEEEEEEGDEEDPGS 189
>At3g01080.1 68416.m00011 WRKY family transcription factor similar
to NtWRKY1 transcription factor GB:BAA82107 from
[Nicotiana tabacum]
Length = 423
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 255 SSDDSQDEQDTKEDDSEKKSNNDLPGSSL 341
SSDDS +D +DD + + + DLP S +
Sbjct: 248 SSDDSGYRKDHDDDDDDDEDDEDLPASKI 276
>At4g02740.1 68417.m00374 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein FBL2
(GI:6063090) [Homo sapiens]
Length = 645
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 255 SSDDSQDEQDTKEDDSEKKSNNDLPGSSLCLGILSDQKFTALEGTVCE 398
+ DD DE+D +DD++ S+ D + +G+ D + ++G V +
Sbjct: 335 AEDDEVDEEDDSDDDTDDVSDEDESENDDDMGMGFDVDYLLVQGQVLD 382
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 408 LGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
L I+ ++ T +Q AIP LL RDL+ A+T K
Sbjct: 164 LNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGK 201
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKF--KPRNGTGV----IILSPTRELSMQ 631
KT AF P I I K + +PR V +ILSPTREL+ Q
Sbjct: 201 KTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQ 244
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 408 LGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
L I+ ++ T +Q AIP LL RDL+ A+T K
Sbjct: 164 LNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGK 201
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKF--KPRNGTGV----IILSPTRELSMQ 631
KT AF P I I K + +PR V +ILSPTREL+ Q
Sbjct: 201 KTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQ 244
>At3g43530.1 68416.m04621 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 615
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 94 PEPEKDIEALNNEKEAKKRVVQDGDTNG 177
PE EKDIE ++EK+ K V QD + +G
Sbjct: 528 PESEKDIEVADSEKD--KEVPQDDEMDG 553
>At3g13700.1 68416.m01731 RNA-binding protein, putative similar to
mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam
profile:PF00076 rrm:RNA recognition motif
Length = 296
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 180 SSQKKIEKGXXXXXXXTS*SKI*GRSSDDSQDEQDTKEDDSEKKSNNDLP 329
+S++K G + +K +S DD DE D+ D+ ++ N+D P
Sbjct: 135 NSRRKERPGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDSP 184
>At3g11070.1 68416.m01337 outer membrane OMP85 family protein
contains Pfam profile PF01103: outer membrane protein,
OMP85 family
Length = 520
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 249 GRSSDDSQDEQDTKEDDSEKKSNNDLPGSSL 341
G DD ++ D ++DD+E KS GSS+
Sbjct: 28 GYEGDDGGEDDDGEDDDTESKSQTRESGSSV 58
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKL----KFKPRNGTGVIILSPTRELSMQTFGVLMELMKYHHH 673
KT AF++P + I +L + G ++++PTREL+ Q + E +K+ H+
Sbjct: 363 KTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQ---IEEETVKFAHY 415
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 381 EGTVCEPTLLGIKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
E + L ++ G+ + IQ AIP L+ RD++G A+T K
Sbjct: 317 ESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGK 363
>At5g50310.1 68418.m06229 kelch repeat-containing protein similar to
Kelch repeats protein 3 (SP:Q08979) [Saccharomyces
cerevisiae]; contains Pfam PF01344: Kelch motif (6
repeats)
Length = 666
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 258 SDDSQDEQDTKEDDSEKKSNND 323
SDD + ++D EDDSE + N++
Sbjct: 499 SDDEEGDEDDDEDDSEDEGNSE 520
>At2g11910.2 68415.m01278 expressed protein
Length = 168
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 258 SDDSQDEQDTKEDDSEKKSNND 323
SDD D++D EDD ++ ND
Sbjct: 75 SDDDDDDEDADEDDDDEDDAND 96
>At2g11910.1 68415.m01277 expressed protein
Length = 168
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 258 SDDSQDEQDTKEDDSEKKSNND 323
SDD D++D EDD ++ ND
Sbjct: 75 SDDDDDDEDADEDDDDEDDAND 96
>At1g25400.1 68414.m03153 expressed protein similar to unknown
protein GI:6714347 from [Arabidopsis thaliana]
Length = 288
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 255 SSDDSQDEQDTKEDDS 302
SSD+ +DE D KEDDS
Sbjct: 100 SSDEEKDEDDNKEDDS 115
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Frame = +2
Query: 518 KTLAFLIPAIDLIYKLKFKPRNGTG---------VIILSPTRELSMQTFGVLMELM-KYH 667
KTLA+L+P + I L K R+ +I++P+REL MQ + +L+ H
Sbjct: 160 KTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVH 219
Query: 668 HHTYGLVMGGATEV 709
++GGA +
Sbjct: 220 RRMVQQLVGGANRM 233
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 414 IKDMGFITMTEIQAKAIPPLLEGRDLVGAAKTALEK 521
++ G + IQ + P L+GRD++ AKT K
Sbjct: 117 LEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGK 152
>At1g63980.1 68414.m07247 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 391
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 261 DDSQDEQDTKEDDSEKKSNND 323
DD DE+D +ED+ E ++++D
Sbjct: 273 DDDDDEEDEEEDEDESEADDD 293
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,061,070
Number of Sequences: 28952
Number of extensions: 250718
Number of successful extensions: 1295
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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