Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0620
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    27   2.2  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    27   3.0  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.9  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.8  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    25   9.0  

>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +1

Query: 232 TTTVIRERPNNRPAAN----GGSPLPSDESNLEPPATNGKLVTDCVNEDTTT 375
           TTTV+ E P   PAA+      + L + +  ++P  TN + VTD V++  T+
Sbjct: 128 TTTVVSEEPVTGPAADVIAAASAALKAAQRTIKPGNTNWQ-VTDIVDKIATS 178


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 658 QYLSL*SYLRGVW-WGTARGCQCVAFLSFFA 569
           +YL   S    ++ WG A  C C+A +SF A
Sbjct: 280 EYLGFVSTFMAIFIWGLAAWCYCLAMVSFLA 310


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 504 GGGSSAEENSLGDSSEATLPNIAKKLRK 587
           G   ++ + SL   SEA+LPN++K  RK
Sbjct: 388 GDTENSVKQSLASPSEASLPNLSKYSRK 415


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 149 EEQNGCGKKWFPHMVELALWTHNIVSDLQPQLLGKGPTTVRLQTAA 286
           + + G  + W  ++  L LW +  VSD + ++L  G    + Q  A
Sbjct: 681 QNETGLHRPWCLYVSTLILWAYGYVSDGRCEMLEPGNNDCKSQLNA 726


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 182 PHMVELALWTHNIVSDLQPQ 241
           PH  +L LW +N+V  + P+
Sbjct: 436 PHAGDLGLWFYNVVDGILPE 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,648
Number of Sequences: 5004
Number of extensions: 65823
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)