Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0620
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0995 - 29545058-29545204,29545988-29546074,29546166-295463...    39   0.004
07_03_1390 + 26217623-26218370,26218435-26218934                       33   0.19 
03_02_0163 - 6056959-6058989                                           30   1.8  
09_06_0313 + 22240971-22242176                                         29   3.1  
02_04_0327 - 22063453-22063725,22064093-22064404,22064724-220648...    29   4.1  
03_05_0031 + 20040889-20041592,20041932-20041977                       29   5.4  
05_01_0068 + 475647-476006                                             28   9.4  
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677...    28   9.4  
01_01_0666 + 5084920-5085297                                           28   9.4  

>03_05_0995 -
           29545058-29545204,29545988-29546074,29546166-29546361,
           29546686-29546915
          Length = 219

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +2

Query: 2   LLAAASPEIAPFMADECVQAIPEMEGSDYTAREYLNFVSHIRNVCDRLNEEQNGCGKKWF 181
           +LAA +P++APFM+DE + A       +YT ++YL F   ++     L+      G++ F
Sbjct: 127 VLAAYAPDVAPFMSDEAMVAALG-NAKEYTLKQYLAFAEKLQTKSKELSS-----GEEVF 180

Query: 182 PHM-VELALWTHNIVS 226
               VE ALW+  + S
Sbjct: 181 TTSDVERALWSSAVAS 196


>07_03_1390 + 26217623-26218370,26218435-26218934
          Length = 415

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -2

Query: 630 EGFGGGPRAGVSVWLSLVS---LRC*VAWPQTSLPVSFLPPNYLLQLSFSSWRADC 472
           +G    P +G+S+W+S+     ++  VA P + L ++ +  N+ +  SF  W+ DC
Sbjct: 249 DGRTAAPASGLSIWMSVAHGFLMKMKVAGPPSGL-IAGVSSNFKMSNSFDDWKNDC 303


>03_02_0163 - 6056959-6058989
          Length = 676

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 197 LALWTHNIVS-DLQPQLLGKGPTTVRLQTAAPPFPVTRAT*SPQRQTVNS 343
           L  W H  +S   QP+     P T R+    PP P + A  SP R +  S
Sbjct: 7   LLSWPHRAISLSFQPKNPSPSPATARVSVQDPPPPPSDANPSPGRSSNTS 56


>09_06_0313 + 22240971-22242176
          Length = 401

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 586 FLSFFAMLGSVASDESPSEFSSAELPPP 503
           F SF  +LGS   D +P E+SS+  P P
Sbjct: 366 FTSFLRVLGSYPMDMTPWEYSSSSSPSP 393


>02_04_0327 -
           22063453-22063725,22064093-22064404,22064724-22064859,
           22065901-22065974,22066084-22066221
          Length = 310

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +1

Query: 193 RAGPLDAQHC--IGLTTTVIRERPNNRPAANGGSPLPSDESNLEP-----PATNGKLVTD 351
           RA P+   H    GL +      P+N  AA G +  PS   +L+P     PA  G  VTD
Sbjct: 3   RAVPVRKTHASTAGLLSWSESPGPDNAAAAAGAAAPPSSRPSLKPAGGITPAMFGAPVTD 62

Query: 352 CVNEDTT 372
              ED T
Sbjct: 63  LEAEDLT 69


>03_05_0031 + 20040889-20041592,20041932-20041977
          Length = 249

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 561 VAWPQTSLPVSFLPPNYLLQLSFSSWRADCRV 466
           +AWP    P +  PP   +Q S  S  ADC V
Sbjct: 17  LAWPAAEAPAAASPPPDPVQCSSGSGTADCTV 48


>05_01_0068 + 475647-476006
          Length = 119

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 190 GRAGPLDAQHCIGLTTTVIRERPNNRPAANGGSPLP 297
           G A   DA  C GL+  +   +P + P A   +PLP
Sbjct: 67  GAANKEDAASCSGLSFLLPTHQPRSLPPAASSTPLP 102


>02_05_0146 -
           26267245-26267339,26267427-26267469,26267589-26267725,
           26268172-26268299,26268419-26268495,26268593-26268679,
           26268817-26268933,26269115-26269165,26269383-26269497,
           26270033-26270292
          Length = 369

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 247 RERPNNRPAANGGSP-LPSDESNLEPPAT 330
           R R  +  AA+GGSP LPS  S+  PP T
Sbjct: 41  RWRVASSAAASGGSPDLPSSSSSSSPPPT 69


>01_01_0666 + 5084920-5085297
          Length = 125

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 399 RESRITLHPRYPCHSSVTLRQLRLC-SQHATN*KTIGGGSSAEENSLGDSSEATLP 563
           RES + +  R  C+ +  +R+L      HAT  +  GG +  EE +LG    A LP
Sbjct: 36  RESPVVVFARRGCYMAHVMRRLLAAVGAHATVIELEGGAAEEEEAALGGG--AALP 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,021,233
Number of Sequences: 37544
Number of extensions: 508074
Number of successful extensions: 1533
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)