Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0620
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42)               31   0.77 
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)                      29   3.1  
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_28204| Best HMM Match : ig (HMM E-Value=5.8e-10)                    28   7.2  
SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)              28   9.5  
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 28   9.5  
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   28   9.5  
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)                   28   9.5  
SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47)                    28   9.5  

>SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = +2

Query: 173 KWFPHMVELALWTHNIVSDLQPQLLGKGPTTVR 271
           KW  H VELALWT+ + S   P LL  G T+ R
Sbjct: 133 KWDEHKVELALWTYTVASKHAPHLLDSGKTSKR 165


>SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42)
          Length = 704

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 427 RGWRVMR-LSRPSSLLCTTSWYPHSRSPLRVYRLSLGALSCSRHWEGGSRRLQPDGC 260
           R W V+R L  P+ +   T  +P +RSP+ +  L    L C       S ++ PD C
Sbjct: 70  REWEVLRTLEHPNIVEMQTVLFPPNRSPVIITELLSCDLECYIRESTSSPKILPDDC 126


>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
          Length = 939

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/53 (30%), Positives = 20/53 (37%)
 Frame = +1

Query: 508 EVVRRKKTHWETRLRPRYLTSQRN*GKPHTDTRARSPTKPLVNNFIDLNIVPR 666
           E+ RR+K  W+     R     R    P T    R+P  P   N     I PR
Sbjct: 680 EIARRRKQFWQASALYRTRNDPRTRNDPRTRNDPRTPNDPRTRNDPRTRIDPR 732


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 516 SAEENSLGDSSEATLPNIAKKLRKATH*HPRAVPHQTPRK*LHRLKYC 659
           S E ++   SS   +P I K+L  A H  P  +P  +P K  +  KYC
Sbjct: 305 SLEFSNTPMSSLVHVPAIVKELDWANHVWPTDLPEDSPHKKPYVQKYC 352


>SB_28204| Best HMM Match : ig (HMM E-Value=5.8e-10)
          Length = 189

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +1

Query: 271 AANGGSPLPSDES--NLEPPATNGKL----VTDCVNEDTTTSCTEDS 393
           A +G  P+ SD+   N++  ATN  L     T CVN++   SCT  S
Sbjct: 67  ARSGNQPVVSDDVYLNVQYKATNVTLRSSTYTTCVNQEVALSCTGTS 113


>SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 564

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 220 CIGLTTTVIRERPNNRPAANGGSPLPSDESNLEPPATN 333
           CI L +      PN+ P  NG   LP  E    P A+N
Sbjct: 10  CIALVSAQGPAVPNSPPGGNGAPVLPHQEVATYPEASN 47


>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 253 RPNNRPAANGGSPLPSDESNLEPPATNGKLVTDCVNEDTTTSCTEDSM 396
           +  N PAA G  P P  E +  PP   G++  +   E   T+ T+D +
Sbjct: 490 KAGNEPAAEGEEPPPEGEGDDLPPEEGGEVPPE-GEEGAETTETKDEL 536


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 202 PLDAQHCIGLTTTVIRERPNNRPAANGGSPLPSDESNLEP 321
           P     C     TVIR+ P NR    G S L ++  +LEP
Sbjct: 602 PKQISRCNRTNLTVIRKVPENRKNVFGSSILLTNTMSLEP 641


>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
          Length = 870

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 275 AAGRLLGLSLITVVVSPIQCCASRGP 198
           A+GRL GL +I+V +S   C A R P
Sbjct: 630 ASGRLEGLPIISVPLSDFNCSAYRPP 655


>SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47)
          Length = 715

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +2

Query: 182 PHMVELALWTHNIVSDLQPQL----LGKGPTTVRLQTAAPPFP 298
           PH    A W    V  +Q +     +G  PT+ +L+ A PP P
Sbjct: 62  PHASVAATWLQPDVGKMQDKFTTAAIGVAPTSAQLRDATPPLP 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,363,774
Number of Sequences: 59808
Number of extensions: 542779
Number of successful extensions: 1439
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)