Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0620
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.1  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   7.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 762 NYQLIPYKTYKKPTG 718
           N+QLI Y  YK P G
Sbjct: 187 NHQLISYAGYKNPDG 201


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 469 SLSCLRVTLEWQG*RGWRVMRLSRPSSLLCTTSWYPHSRSPLRV-YRLSLGALS 311
           + +C+++    +   G+ +     PS+L+   SW      P  +  R++LG  S
Sbjct: 199 NFTCIQIVFNLRRRLGYHLFHTYIPSALIVVMSWIAFWIKPEAIPARVTLGVTS 252


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 218 IVSDLQPQLLGKGPTTVRLQTAAPP 292
           I   +Q ++    P+T++++  APP
Sbjct: 84  IADRMQKEITALAPSTMKIKIIAPP 108


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 140 YHRRFVCGLRN*GIPLLCNRCLPFRGSPGRIRQP 39
           +++ F+  +R  G+P   N      G+ GR+ QP
Sbjct: 78  HNKTFLAVIRYNGVPSSLNVVSDKTGNGGRLLQP 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,593
Number of Sequences: 438
Number of extensions: 5095
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)